Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program

The effectiveness of environmental protection measures is based on the early identification and diagnosis of anthropogenic pressures. Similarly, restoration actions require precise monitoring of changes in the ecological quality of ecosystems, in order to highlight their effectiveness. Monitoring the ecological quality relies on bioindicators, which are organisms revealing the pressures exerted on the environment through the composition of their communities. Their implementation, based on the morphological identification of species, is expensive because it requires time and experts in taxonomy. Recent genomic tools should provide access to reliable and high-throughput environmental monitoring by directly inferring the composition of bioindicators’ communities from their DNA (metabarcoding). The French-Swiss program SYNAQUA (INTERREG France-Switzerland 2017–2019) proposes to use and validate the tools of environmental genomic for biomonitoring and aims ultimately at their implementation in the regulatory bio-surveillance. SYNAQUA will test the metabarcoding approach focusing on two bioindicators, diatoms, and aquatic oligochaetes, which are used in freshwater biomonitoring in France and Switzerland. To go towards the renewal of current biomonitoring practices, SYNAQUA will (1) bring together different actors: scientists, environmental managers, consulting firms, and biotechnological companies, (2) apply this approach on a large scale to demonstrate its relevance, (3) propose robust and reliable tools, and (4) raise public awareness and train the various actors likely to use these new tools. Biomonitoring approaches based on such environmental genomic tools should address the European need for reliable, higher-throughput monitoring to improve the protection of aquatic environments under multiple pressures, guide their restoration, and follow their evolution.     

Emerging technologies for removing nonpoint phosphorus from surface water and groundwater: introduction

Coastal and freshwater eutrophication continues to accelerate at sites around the world despite intense efforts to control agricultural P loss using traditional conservation and nutrient management strategies. To achieve required reductions in nonpoint P over the next decade, new tools will be needed to address P transfers from soils and applied P sources. Innovative remediation practices are being developed to remove nonpoint P sources from surface water and groundwater using P sorbing materials (PSMs) derived from natural, synthetic, and industrial sources. A wide array of technologies has been conceived, ranging from amendments that immobilize P in soils and manures to filters that remove P from agricultural drainage waters. This collection of papers summarizes theoretical modeling, laboratory, field, and economic assessments of P removal technologies. Modeling and laboratory studies demonstrate the importance of evaluating P removal technologies under controlled conditions before field deployment, and field studies highlight several challenges to P removal that may be unanticipated in the laboratory, including limited P retention by filters during storms, as well as clogging of filters due to sedimentation. Despite the potential of P removal technologies to improve water quality, gaps in our knowledge remain, and additional studies are needed to characterize the long-term performance of these technologies, as well as to more fully understand their costs and benefits in the context of whole-farm- and watershed-scale P management.     

Use of reactive materials to bind phosphorus

Phosphorus (P) losses from agricultural soils have caused surface water quality impairment in many regions of the world, including The Netherlands. Due to the large amounts of P accumulated in Dutch soils, the generic fertilizer and manure policy will not be sufficient to reach in time the surface water quality standards of the European Water Framework Directive. Additional measures must be considered to further reduce P enrichment of surface waters. One option is to immobilize P in soils or manure or to trap P when it moves through the landscape by using reactive materials with a large capacity to retain P. We characterized and tested two byproducts of the process of purification of deep groundwater for drinking water that could be used as reactive materials: iron sludge and iron-coated sand. Both materials contain low amounts of inorganic contaminants, which also have a low (bio)availability, and bound a large amount of P. We could describe sorption of P to the iron sludge in batch experiments well with the kinetic Freundlich equation (Q = × t (m) × C(n)). Kinetics had a large influence on P sorption in batch and column experiments and should be taken into account when iron-containing materials are tested for their capability to immobilize or trap P. A negative aspect of the iron sludge is its low hydraulic conductivity; even when mixed with pure sand to a mixture containing 20% sludge, the conductivity was very low, and only 10% sludge may be needed before application is possible in filters or barriers for removing P from groundwater. Due to its much higher hydraulic conductivity, iron-coated sand has greater potential for use under field conditions. Immobilizing P could be an option for using iron sludge as a reactive material.     

Impact of chronic exposure to low doses of chlorpyrifos on the intestinal microbiota in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®) and in the rat

The impact of the insecticide chlorpyrifos (CPF) on the mammalian digestive system has been poorly described. The present study aimed at evaluating the effect of chronic, low-dose exposure to CPF on the composition of the gut microbiota in a Simulator of the Human Intestinal Microbial Ecosystem: the SHIME® and in rats. The SHIME® comprises six reactor vessels (stomach to colon). The colonic segments were inoculated with feces from healthy humans. Then, the simulator was exposed to a daily dose of 1 mg of CPF for 30 days. The changes over time in the populations of bacteria were examined at different time points: prior to pesticide exposure (as a control) and after exposure. In parallel, pregnant rats were gavaged daily with 1 mg/kg of CPF (or vehicle) until the pups were weaned. Next, the rats were gavaged with same dose of CPF until 60 days of age (adulthood). Then, samples of different parts of the digestive tract were collected under sterile conditions for microbiological assessment. Chronic, low-dose exposure to CPF in the SHIME® and in the rat was found to induce dysbiosis in the microbial community with, in particular, proliferation of subpopulations of some strains and a decrease in the numbers of others bacteria. In compliance with European guidelines, the use of the SHIME® in vitro tool would help to (1) elucidate the final health effect of toxic agents and (2) minimize (though not fully replace) animal testing. Indeed, certain parameters would still have to be studied further in vivo.     

Water and nutrient transport on a heavy clay soil in a fluvial plain in the Netherlands

In flat areas, transport of dissolved nutrients by water through the soil matrix to groundwater and drains is assumed to be the dominant pathway for nutrient losses to ground- and surface waters. However, long-term data on the losses of nutrients to surface water and the contribution of various pathways is limited. We studied nutrient losses and pathways on a heavy clay soil in a fluvial plain in The Netherlands during a 5-yr period. Average annual nitrogen (N) and phosphorus (P) losses to surface water were 15.1 and 3.0 kg ha(-1) yr(-1), respectively. Losses were dominated by particulate N (50%) and P (70%) forms. Rapid discharge through trenches was the dominant pathway (60-90%) for water and nutrient transport. The contribution of pipe drains to the total discharge of water and nutrients was strongly related to the length of the dry period in the preceding summer. This relationship can be explained by the very low conductivity of the soil matrix and the formation of shrinkage cracks during summer. Losses of dissolved reactive P through pipe drains appear to be dominated by preferential flow based on the low dissolved reactive P concentration in the soil matrix at this depth. Rainfall occurring after manure application played an important role with respect to the annual losses of N and P in spring when heavy rainfall occurred within 2 wk after manure application.     

Phosphorus leaching from cow manure patches on soil columns

The loss of P in overland flow or leachate from manure patches can impair surface water quality. We studied leaching of P from 10-cm-high lysimeters filled with intact grassland soil or with acid-washed sand. A manure patch was created on two grassland and two sand-filled lysimeters, and an additional two grass lysimeters served as blanks. Lysimeters were leached in the laboratory during 234 d with a diluted salt solution, and column effluent was passed through a 0.45-microm filter, analyzed for pH, dissolved reactive P (DRP), and total dissolved P (TDP). At the end of the experiment lysimeter soil was sampled and analyzed for pH, available P, and oxalate-extractable P, Fe, and Al. The concentration of TDP in the effluent from the sand column increased to 25 mg L-1 during the first weeks and remained above 10 mg L-1 during the rest of the percolation. In effluent from grass + patch lysimeters TDP gradually increased to 4 mg L-1. Both in the manure and in the effluent of the sand lysimeter P was found mainly in the form of DRP, but in the effluent from the grass lysimeters was found mainly as dissolved unreactive P (DUP=TDP-DRP). Earthworm activity was responsible for decomposition of the manure patch on the grass lysimeters. Manure patches and their remains were found to be a long-term source of high concentrations of P in leachates. Spreading of patches after a grazing period could reduce their possible negative impacts on the environment.     

A Strategy for the Evaluation of Sensory and Pulmonary Irritation Due to Chemical Emissions from Indoor Sources

Abstract

Sensory and pulmonary irritation are physiological responses to chemical exposure which result in characteristic, measurable changes in respiratory activity in mice. A standard method has been applied to the estimation of sensory irritation associated with a specific chemical exposure. This method has been correlated with human responses to these chemicals. Symptoms associated with chemical irritants are consistent with complaints due to problems with indoor air quality, which may include eye and upper respiratory tract irritation, headaches, and nausea. A stepwise strategy for assessing the contribution of indoor products to sensory and pulmonary irritation is discussed in the current paper. The strategy includes product emissions testing using dynamic environmental chambers, the selection of suspected irritants for respiratory irritation testing, respiratory irritation testing of individual compounds and representative mixtures using synthesized atmospheres, and the evaluation of test data to determine those compounds which may contribute to sensory and pulmonary irritation in humans. The current strategy is being applied to evaluate carpet system materials and their constituent chemicals.