Bayesian estimation of species relative abundances and habitat preferences using opportunistic data

We develop a new statistical procedure to monitor relative species abundances and their respective preferences for different habitat types, using opportunistic data. Following Giraud et al. (Biometrics 72(2):649–658, 2015), we combine the opportunistic data with some standardized data in order to correct the bias inherent to the opportunistic data collection. Species observations are modeled by Poisson distributions whose parameters quantify species abundances and habitat preferences, and are estimated using Bayesian computations. Our main contributions are (i) to tackle the bias induced by habitat selection behaviors, (ii) to handle data where the habitat type associated to each observation is unknown, (iii) to estimate probabilities of selection of habitat for the species. As an illustration, we estimate common bird species habitat preferences and abundances in the region of Aquitaine (France).     

Delimiting synchronous populations from monitoring data

We propose to investigate spatial synchrony in population dynamics from monitoring data. We develop a statistical procedure to delineate populations of sites with synchronous dynamics from short time series. The procedure relies on a new norm, the synchronous total variation norm, which promotes synchrony in the estimation of the sites dynamics. The method is tested on some synthetic data sets and is applied on data from the French breeding bird monitoring program.     

Behavior of PCNs, PCDDs, PCDFs, and dioxin-like PCBs in the thermal destruction of wastes containing PCNs

In the first known study to characterize the emissions of polychlorinated naphthalenes (PCNs), polychlorinated dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs), and dioxin-like polychlorinated biphenyls (dl-PCBs) from the thermal treatment of wastes containing PCNs, the formation and decomposition behavior of these pollutants was investigated both at laboratory scale and at plant scale. Exhaust gas measurements from laboratory-scale combustion of rubber belts containing PCNs (FB belts) were used as the basis for calculations predicting that the incremental dioxin toxic equivalency (TEQ) emissions from municipal solid waste (MSW) incinerators would be less than 0.1 ng/m3 N. In order to directly examine co-incineration of FB belts with MSW and to address potential differences between the laboratory experiment and full-scale MSW incinerators, experiments were conducted using a larger scale thermal treatment test facility with sampling and analysis at several points in the thermal treatment process. Congener specific analysis of PCNs clearly showed that both destruction and synthesis simultaneously occurred during combustion in the kiln. Most of the PCNs were destroyed by secondary combustion, and almost all PCNs were removed after flue gas treatment. Almost all PCDDs/DFs were synthesized as by-products of kiln combustion, most of them were destroyed by the secondary combustion, and almost all dioxins (PCDDs/DFs and dl-PCBs) were removed after flue gas treatment. The TEQ emission levels were less than 0.1 ng/m3 N for all plant-scale tests, and differences in TEQ emission levels were very small. Adding wastes containing PCNs to MSW will not influence thermal treatment emissions to the environment from modern solid waste incinerators.     

Brown rust disease control in winter wheat: II. Exploring the optimization of fungicide sprays through a decision support system

A decision support system (DSS) involving an approach for predicting wheat leaf rust (WLR) infection and progress based on night weather variables (i.e., air temperature, relative humidity, and rainfall) and a mechanistic model for leaf emergence and development simulation (i.e., PROCULTURE) was tested in order to schedule fungicide time spray for controlling leaf rust progress in wheat fields. Experiments including a single fungicide treatment based upon the DSS along with double and triple treatment were carried out over the 2007–2009 cropping seasons in four representative Luxembourgish wheat field locations. The study showed that the WLR occurrences and severities differed according to the site, cultivar, and year. We also found out that the single fungicide treatment based on the DSS allowed a good protection of the three upper leaves of susceptible cultivars in fields with predominant WLR occurrences. The harvested grain yield was not significantly different from that of the double and triple fungicide-treated plots (P?<?0.05). Such results could serve as basis or be coupled to cost-effective and environmentally friendly crop management systems in operational context.     

Prenatal diagnosis of Fryns' syndrome

We report on a new case of ultrasonographic prenatal diagnosis of Fryns' syndrome during the second pregnancy of a young woman whose first child died 90 min after birth and was diagnosed as having this autosomal recessive condition. The feasibility of diagnosis in utero and timing in the phenotypic expression of this multimalformation syndrome are discussed.     

Chemical synthesis of 6-pentyl-2H-pyran-2-one: a natural antifungal biosynthesized by Trichoderma spp.

Trichoderma spp. biosynthesize 6-pentyl-2H-pyran-2-one (6-PP), a natural antifungal pyrone which could be used as biological control agent (BCA). Unfortunately, biotechnical processes are limited by inhibition of biomass at high concentration of 6-PP. We report herein a new easy synthesis of this natural pyrone, using readily available starting materials. This synthesis, compatible with a large production scale, permit to obtain overweight amounts of 6-PP that in biotechnological routes.     

Development of a loading dock safety evaluation tool

INTRODUCTION: Companies that use forklifts to load and unload trucks at loading docks are well aware of the main danger associated with this type of activity (i.e., the possibility of the forklift falling or tipping over when the truck suddenly moves away from the dock). Even if various truck restraint measures can be implemented to reduce the possibility of this type of accident, a number of hazardous incidents that result in a forklift tipping over from a loading dock still do occur regularly in day-to-day activities. This situation has brought experts to examine and evaluate the effectiveness of different measures and systems depending on the context in which they are used. METHODS: The present study touched upon both the technical and the organizational aspects of the restraint measures that could have an impact on safety. Certain elements were examined very closely, especially the failure of mechanical devices and their relation to the environment in which they are used, as well as the systemic interaction between people and the various restraint measures in use in a given context. CONCLUSION: This article presents a safety evaluation tool regarding restraint measures or systems for trucks docked at loading platforms - a tool that, of course, would take into consideration both the specific contextual aspects related to the docking bay itself, and to the plant. IMPACT ON INDUSTRY: This tool is designed to help companies choose the optimal safety measures to implement, while remaining realistic in terms of the technical and economic aspects of any given situation.     

High genetic relatedness among nestmate queens in the polygynous ponerine ant Gnamptogenys striatula in Brazil

Gnamptogenys striatula is a polygynous ant species, in which all workers are potentially able to mate. The reproductive status, relatedness and pedigree relationships among nestmate queens and winged females in a Brazilian population were investigated. We collected all the sexual females of 12 colonies (2–44 queens per colony, plus 2–18 winged females in 3 colonies). Dissections revealed that 98% of the queens were inseminated and that the queens in the most polygynous colonies did not lay equal numbers of eggs. The sexual females and a sample of the population were genotyped using eight microsatellite markers. Relatedness among nestmate queens was among the highest recorded to date (0.65±0.25), and tests of pedigree relationship showed that they were likely to be full-sisters, and sometimes cousins. Mated winged females were always full-sisters, the estimated genetically effective queen numbers were low and tests of pedigree relationship showed that only a few queens in the colony could be the mothers. These results suggest that the high queen-queen relatedness in polygynous colonies of G. striatula is maintained by an unusual mechanism: winged females are mostly produced by only one or a few queens, and these groups of full-sisters are recruited back into their original nest after mating. Received: 26 November 1999 / Revised: 7 September 2000 / Accepted: 7 September 2000     

Effects of sediment on the survival of asexually produced sponge recruits

Sediment deposition is known to affect the structure of marine rocky-bottom communities, but its specific effects on some key organisms, such as sponges, remain poorly investigated. In a 125-day field experiment involving different treatments of exposure to sediment deposition, we investigated survival of asexually produced recruits of the sublittoral demosponge Scopalina lophyropoda, a model organism suitable to understand similar processes in other sponges. A total of 660 explants obtained from 11 non-clonal sponges (explant donors) were distributed on 30 experimental plates. Each donor sponge contributed two clonal explants per plate, one settled under a roof at a silt-protected position and the other at a silt-exposed position. Plates were installed at the rocky walls of the natural community, also at the pillars of a local harbor where the sponge does not occur naturally. A 3-way ANOVA testing for differences in explant longevity as a function of explant donor, exposure to sediment, and habitat detected that longevity was affected by both an undetermined genetic condition of the explant donor and exposure to silt. Silt-protected explants lived longer than silt-exposed explants. A significant “Silt-exposure × Habitat” interaction detected that silt-exposed explants lived shorter within the harbor than in the natural community, suggesting that harbor silt, which was notably finer, is more deleterious. Inspection of daily mortality rates revealed that the detrimental effects of silt were very evident during the first 20 days in treatments and irrespective of habitat. Then, mortality rates progressively decreased, reaching negligible values in all 4 sponge groups by day 65. At this stage, an undetermined mortality factor other than purely sediment deposition reactivated mortality in all 4 sponge groups, but it affected more intensely the sponges in the harbor, irrespective of being protected from or exposed to sediment deposition. All together, the results of our field experiment suggest that sediment loads are a major mortality factor among small sponge individuals in sublittoral rocky communities. Because a significant “donor factor” suggests an unidentified “genetic component” to be involved in the ability to cope with sediment, natural or man-driven processes increasing coastal sediment deposition are susceptible to induce changes not only in the abundance but also the genetic structure of the sponge populations in the long term.