Serial patterns of biodiversity change in corals across shallow reef flats in Ko Phuket,Thailand, due to the effects of local (sedimentation) and regional (climatic) perturbations

A 17-year monitoring programme of reef flats at Ko Phuket, Thailand afforded an opportunity to evaluate both univariate and multivariate measures of environmental stress in an assessment of change on coral reef ecosystems. The sites at Ko Phuket suffered the effects of dredging in 1986-1987 and then anomalously low sea levels in 1997-1998 as a result of climate-related events in the Indian Ocean. Univariate measures of species diversity and taxonomic distinctness ((*) increased across the reef flat, reflecting the greater effects of physical stresses on the inner reef flats (compared with outer reef flats) at all sites, with more congeneric species present on the inner reef and more confamilial species on the outer reef. Multivariate measures showed a clear breakdown in seriation patterns at all sites during the dredging in 1987 and in 1998, as a result of earlier negative sea-level anomalies. Recovery from environmental disturbances was obvious within 12 months in each case. The domination of the reefs by massive coral species, which are physiologically adapted to intertidal living and which display partial rather than total colony mortality, may be a factor contributing to the apparent resilience of the reef flats together with continued recruitment and survival of juvenile corals during adverse environmental conditions. Elevated sea temperatures and extensive bleaching of corals in 1991, 1995, and 1998 had no effect upon coral community measures, with many corals recovering their zooxanthellae numbers within 3-5 months of the bleaching events.     

Habitat biodiversity as a determinant of fish community structure on coral reefs

Increased habitat diversity is often predicted to promote the diversity of animal communities because a greater variety of habitats increases the opportunities for species to specialize on different resources and coexist. Although positive correlations between the diversities of habitat and associated animals are often observed, the underlying mechanisms are only now starting to emerge, and none have been tested specifically in the marine environment. Scleractinian corals constitute the primary habitat-forming organisms on coral reefs and, as such, play an important role in structuring associated reef fish communities. Using the same field experimental design in two geographic localities differing in regional fish species composition, we tested the effects of coral species richness and composition on the diversity, abundance, and structure of the local fish community. Richness of coral species overall had a positive effect on fish species richness but had no effect on total fish abundance or evenness. At both localities, certain individual coral species supported similar levels of fish diversity and abundance as the high coral richness treatments, suggesting that particular coral species are disproportionately important in promoting high local fish diversity. Furthermore, in both localities, different microhabitats (coral species) supported very different fish communities, indicating that most reef fish species distinguish habitat at the level of coral species. Fish communities colonizing treatments of higher coral species richness represented a combination of those inhabiting the constituent coral species. These findings suggest that mechanisms underlying habitat-animal interaction in the terrestrial environment also apply to marine systems and highlight the importance of coral diversity to local fish diversity. The loss of particular key coral species is likely to have a disproportionate impact on the biodiversity of associated fish communities.     

Measuring mucus thickness in reef corals using a technique devised for vertebrate applications

A method previously used to measure thickness of the surface mucus layer (SML) of the mammalian gastrointestinal tract has been applied to the SML of reef corals. It involves manual measurement of mucus thickness using a micromanipulator and fine glass needle (micropipette) and is non-destructive to the coral, meaning that repeated measurements can be taken. A measurable mucus layer was recorded in all cases in the study, which comprised 450 individual thickness measurements from four coral species. Mucus thickness ranged from 145 to 700 μm. Thus, whatever dynamic processes control mucus synthesis, secretion to the tissue surface and subsequent release into the water column, a continuous mucosal barrier is maintained. A change in SML thickness was recorded as a response to aerial exposure during the natural tidal cycle and to solar exposure-induced bleaching, although the response due to bleaching varied between two studied species. The technique is rapid, cost-effective and a simple means of assessing coral SML thickness, a variable that shows significant variation in relation to environmental conditions and is likely to be an important health indicator in these organisms.     

Assessing the effects of disease and bleaching on Florida Keys corals by fitting population models to data

Coral diseases have increased in frequency over the past few decades and have important influences on the structure and composition of coral reef communities. However, there is limited information on the etiologies of many coral diseases, and pathways through which coral diseases are acquired and transmitted are still in question. Furthermore, it is difficult to assess the impacts of disease on coral populations because outbreaks often co-occur with temperature-induced bleaching and anthropogenic stressors. We developed spatially explicit population models of coral disease and bleaching dynamics to quantify the impact of six common diseases on Florida Keys corals, including aspergillosis, dark spots, white band, white plague, white patch, and Caribbean yellow band. Models were fit to an 8-year data set of coral abundance, disease prevalence, and bleaching prevalence. Model selection was used to assess alternative pathways for disease transmission, and the influence of environmental stressors, including sea temperature and human population density, on disease prevalence and coral mortality. Classic disease transmission from contagious to susceptible colonies provided the best-fit model only for aspergillosis. For other diseases, external disease forcing, such as through a vector or directly from pathogens in the environment, provided the best fit to observed data. Estimates of disease reproductive ratio values (R₀) were less than one for each disease, indicating coral colonies were below densities required for diseases to become established through contagious spread alone. Incidences of white band and white patch disease were associated with greater susceptibility or slower recovery of bleached colonies, and no disease outbreaks were associated with periods of elevated sea temperatures alone. Projections of best-fit models indicated that, atleast during the period of this study, disease and bleaching did not have substantial impacts on populations and impaired rates of population growth appeared to be attributable to other stressors. By applying epidemiological models to field data, our study gives qualitative insights into the dynamics of coral diseases, relative stressor impacts, and directions for future research.     

Growth and bleaching of the coral Oculina patagonica under different environmental conditions in the western Mediterranean Sea

The success that the putative alien species Oculina patagonica is able to survive under different environmental conditions may be benefiting its establishment and spreading along the Mediterranean Basin. Our objectives were to determine the response of this species, in terms of growth and bleaching, under different environmental conditions. Field data on colony growth and bleaching were obtained for a period of 18 months (from June 2010 to December 2011), in the Alicante Harbour (38°20′11″N, 00°29′11″W) and the Marine Protected Area of Tabarca (38°09′59″N, 00°28′56″W). Additionally, data on sedimentation rates, chlorophyll a concentration and organic matter were also collected. Moreover, the role of light over growth and bleaching of the coral was also studied with a field experiment. Our results showed that growth rates were similar among localities (eutrophic and oligotrophic environments), decreasing with increasing perimeter of the colony. Growth rates were at a minimum during cold months (13 °C) and enhanced during warm months until a threshold temperature; thereafter, bleaching was observed (>28 °C), being adverse for coral growth. In addition, light attenuation could act such as local stress, increasing the coral bleaching with the increase in seawater temperature. Our findings confirmed that O. patagonica has a broad tolerance to seawater temperature, irradiance and trophic water conditions, in addition to its ability to thrive through bleaching events, mainly in eutrophic environments, probably related to food availability.     

Effects of coral transplantation in sites of varying distances and environmental conditions

Several scleractinian coral species with different growth forms and life history strategies were studied in terms of colony growth (expressed as projected linear increment) and survivorship over a range of distances and environmental conditions in the Philippines. The experimental design consisted of 1 m² plots grouped within a reef site, to several sites within reef systems separated by a distance of about 340 km. There were distinct differences among species, with submassive and massive forms displaying slower growth but better survival, confirming results of other studies. They probably play the role of framework builders of the reef. In contrast, the delicate branching and foliose species had higher growth rates but poor survivorship. This observation, plus their ease of fragmentation, suggests they act more as fillers of the reef matrix. There was high variability in colony increment of a species among the square meter plots, but not among sites within a reef system. Thus, more regular pattern could be observed at this level. In contrast to growth, survivorship differed significantly among sites, being lowest in the site which harbored the greatest amount of dead coral. Growth and survival, however, are not sufficient performance measures to evaluate the success of coral transplantation. Reproduction and subsequent recruitment must also be taken into account. It is recommended that coral transplant and restoration studies consider the broad environmental context of restoration and seek to develop assembly rules that will allow practitioners to match coral types and sequence of interventions to each unique context.     

Coral identity underpins architectural complexity on Caribbean reefs

The architectural complexity of ecosystems can greatly influence their capacity to support biodiversity and deliver ecosystem services. Understanding the components underlying this complexity can aid the development of effective strategies for ecosystem conservation. Caribbean coral reefs support and protect millions of livelihoods, but recent anthropogenic change is shifting communities toward reefs dominated by stress-resistant coral species, which are often less architecturally complex. With the regionwide decline in reef fish abundance, it is becoming increasingly important to understand changes in coral reef community structure and function. We quantify the influence of coral composition, diversity, and morpho-functional traits on the architectural complexity of reefs across 91 sites at Cozumel, Mexico. Although reef architectural complexity increases with coral cover and species richness, it is highest on sites that are low in taxonomic evenness and dominated by morpho-functionally important, reef-building coral genera, particularly Montastraea. Sites with similar coral community composition also tend to occur on reefs with very similar architectural complexity, suggesting that reef structure tends to be determined by the same key species across sites. Our findings provide support for prioritizing and protecting particular reef types, especially those dominated by key reef-building corals, in order to enhance reef complexity.     

Recovery of corals a decade after a bleaching event in Dubai, United Arab Emirates

Elevated sea surface temperatures in the late 1990s were associated with widespread coral mortality in the Arabian Gulf, particularly in Acropora dominated areas. This study investigates the composition, condition, and recruitment patterns of coral communities in Saih Al-Shaib, Dubai, United Arab Emirates, a decade after mass bleaching. Five statistically distinct communities were identified by cluster analysis, with grouping optimized from 17 significant indicator species. Overall, 25 species of scleractinian coral were observed, representing 35 ± 1.6% coral cover. Densities of recruits were low (0.8 ± 0.2 m⁻²), and composition generally reflected that of the surrounding adult community. Ten years after mass mortality, Acropora dominated assemblages were observed in three of the six sites examined and coral cover (41.9 ± 2.5%) was double post-bleaching cover. One shallow near-shore site appears to have had recovery of Acropora reset by a further bleaching event in 2002. However, the prevalence of young Acropora colonies here indicates that recovery may recur in several years. One area formerly dominated by Acropora is now dominated by faviids and poritids, with adult and juvenile composition suggesting this dominance shift is likely to persist. Porites lutea and Porites harrisoni dominated communities were negligibly impacted by the bleaching events, and the limited change in coral cover and composition in intervening years likely results from slow growth and low recruitment. Despite strong recovery of several dominant Acropora species, five formerly common species from this area were not observed suggesting local extinction. Dubai coral communities exhibit both resistance and resilience to elevated sea temperatures. The conservation of these patch reefs is warranted given the predicted increase in bleaching events, and the role that these communities may play in regional recovery.     

Extremes, plasticity, and invariance in vertebrate life history traits: insights from coral reef fishes

Life history theory predicts a range of directional generic responses in life history traits with increasing organism size. Among these are the relationships between size and longevity, mortality, growth rate, timing of maturity, and lifetime reproductive output. Spanning three orders of magnitude in size, coral reef fishes provide an ecologically diverse and species-rich vertebrate assemblage in which to test these generic responses. Here we examined these relationships by quantifying the life cycles of three miniature species of coral reef fish from the genus Eviota (Gobiidae) and compared their life history characteristics with other reef fish species. We found that all three species of Eviota have life spans of < 100 days, suffer high daily mortality rates of 7-8%, exhibit rapid linear growth, and matured at an earlier than expected size. Although lifetime reproductive output was low, consistent with their small body sizes, short generation times of 47-74 days help overcome low individual fecundity and appear to be a critical feature in maintaining Eviota populations. Comparisons with other coral reef fish species showed that Eviota species live on the evolutionary margins of life history possibilities for vertebrate animals. This addition of demographic information on these smallest size classes of coral reef fishes greatly extends our knowledge to encompass the full size spectrum and highlights the potential for coral reef fishes to contribute to vertebrate life history studies.     

Coral Bleaching and Global Climate Change: Scientific Findings and Policy Recommendations

Abstract: In 1998, tropical sea surface temperatures were the highest on record, topping off a 50-year trend for some tropical oceans. In the same year, coral reefs around the world suffered the most extensive and severe bleaching ( loss of symbiotic algae) and subsequent mortality on record. These events may not be attributable to local stressors or natural variability alone but were likely induced by an underlying global phenomenon. It is probable that anthropogenic global warming has contributed to the extensive coral bleaching that has occurred simultaneously throughout the reef regions of the world. The geographic extent, increasing frequency, and regional severity of mass bleaching events are an apparent result of a steadily rising baseline of marine temperatures, combined with regionally specific El Niño and La Niña events. The repercussions of the 1998 mass bleaching and mortality events will be far-reaching. Human populations dependent on reef services face losses of marine biodiversity, fisheries, and shoreline protection. Coral bleaching events may become more frequent and severe as the climate continues to warm, exposing coral reefs to an increasingly hostile environment. This global threat to corals compounds the effects of more localized anthropogenic factors that already place reefs at risk. Significant attention needs to be given to the monitoring of coral reef ecosystems, research on the projected and realized effects of global climate change, and measures to curtail greenhouse gas emissions. Even those reefs with well-enforced legal protection as marine sanctuaries, or those managed for sustainable use, are threatened by global climate change.     

Major bleaching events can lead to increased thermal tolerance in corals

Climate change is a major threat to coral reef ecosystems worldwide. A key determinant of the fate of reef corals in a warming climate is their capacity to tolerate increasing thermal stress. Here, an increase in thermal tolerance is demonstrated for three major coral genera (Acropora, Pocillopora and Porites) following the extensive mass bleaching event that occurred on the Great Barrier Reef (Australia) in 1998. During the subsequent and more severe thermal stress event in 2002, bleaching severity was 30–100% lower than predicted from the relationship between severity and thermal stress in 1998, despite higher solar irradiances during the 2002 thermal event. Coral genera most susceptible to thermal stress (Pocillopora and Acropora) showed the greatest increase in tolerance. Although bleaching was severe in 1998, whole-colony mortality was low at most study sites. Therefore, observed increases in thermal tolerance cannot be explained by selective mortality alone, suggesting a capacity for acclimatization or adaptation. Although the vulnerability of coral reefs remains largely dependent on the rate and extent of climate change, such increase in thermal tolerance may delay the onset of mass coral mortalities in time for the implementation of low-emission scenarios and effective management.     

A spatial model of growth and competition strategies in coral communities

A discrete spatial simulation model is developed to investigate the type and intensity of biological and physical factors influencing the structure of coral communities. The model represents reproduction, growth, and interspecific competition by coral colonies in terms of “ownership” of space in a plot of reef habitat. Using data for several eastern Pacific coral species, the model reproduces observed changes in species composition and diversity during coral community development. Model results suggest that during early successional stages, or in areas that are frequently disturbed, larval colonization and rapid growth are more important than dominance achieved by extracoelenteric digestion or by growing over another coral in acquiring and maintaining possession of reef substrate. In mature communities that remain undisturbed, dominance is the best competitive strategy. Although the model was developed to study natural and man-induced changes in the community dynamics of coral reefs, it could be adapted to study other sessile organisms where spatial pattern is an important influence on the frequency and outcome of biological interactions.     

Effects of eutrophication on reef-building corals

Seven fringing reef complexes were chosen along the leeward coast (west) of Barbados to study the effects of eutrophication processes upon the scleractinian coral assemblages. The structure of scleractinian coral communities was studied along an eutrophication gradient with a quantitative sampling method (line transect) in terms of species composition, zonation and diversity patterns. On the basis of these data the fringing reefs were divided into three ecological zones: back reef, reef flat, and spur and groove. Statistically discernible and biologically significant differences in scleractinian coral community structure, benthic algal cover and Diadema antillarum Philippi densities were recorded among the seven fringing reefs. High correlations between environmental variables and biotic patterns indicate that the effects of eutrophication processes (nutrient enrichment, sedimentation, turbidity, toxicity and bacterial activity) were directly and/or indirectly affecting the community structure of scleractinian coral assemblages. In general, species diversity was most sensitive in delineating among-reef, and among-zone, differences, which were attributed to intensification of eutrophication processes. Porites astreoides Lamarck, P. porites (Pallas), Siderastrea radians (Pallas), and Agaricia agaricites (Linnaeus) were the most abundant coral species in the polluted southern reefs. The absence and/or low abundance of coral species previously characterized as well adapted to high turbidity and sedimentation [i.e. Montastrea cavernosa Linnaeus, Meandrina meandrites (Linnaeus)] indicate that eutrophication processes may adversely affect these species. It is suggested that sediment rejection abilities, combined with feeding and reproductive strategies, are the primary biological processes of scleractinian corals through which eutrophication processes directly and/or indirectly affect the structure of coral communities.     

Community structure and species diversity of hermatypic corals at Eilat,Red Sea

This study investigates the community structure of reefbulding corals in terms of species composition, zonation and diversity patterns, as well as possible factors affecting the observed distributions. The study was carried out by a series of line transects run underwater with SCUBA apparatus from the reef flat to a depth of 30 m. The reefs of Eilat are of the fringing type, with seleractinian corals as the most important hermatypic organisms. The different zones of the reef are analyzed on the basis of topographical characteristics of the reef, as well as from the numerical data on abundance and living coverage, using cluster analysis of all transects surveyed. The present knowledge concerning species diversity is reviewed and analyzed in the context of hermatypic coral data. Three different diversity indices (the species count, Simpson's index and Shannon and Weaver's index) were calculated for estimating the diversity obtained on different zones of the reef. It was found that there is a successive increase in diversity of hermatypic corals from shallow water to a depth of 30 m. Species diversity and living voverage of corals were significantly greater in steeper zones as compared to flatter zones of the reef. A possible explanation for this phenomenon is the accumulation of sediments in the flat zones. It is proposed that the severe and umpredictable nature of the reef flat may account for low abundance and living coverage of corals. It is also proposed that deep-water species which do not invade shallow water are species which have developed high specialization to their local environment. The idea that light intensity is a significant factor in calcium-carbonate deposition by scleractinian corals is supported by field measurements of individual colonies at different depths.This paper is part of a thesis submitted to the State University of New York at Stony Brook in partial fulfillment of the requirements for a Ph. D. degree.     

Behavioural flexibility in reef fishes responding to a rapidly changing wave environment

Flexible traits can be crucial in helping animals meet the challenges of a highly variable environment. We examined whether coral reef fishes systematically alter their swimming behaviour in response to temporal changes in hydrodynamic conditions. Exploiting site-based differences in wave energy impinging on reef habitats over calm and rough weather, we found many reef fishes changed their swimming behaviour alongside increases in wave-driven water motion. Most fishes tended to orient their bodies parallel to oncoming wave-driven flow and recruited additional stabilising fins during rough weather; such changes in swimming behaviour aid stability and minimise drag. However, not all species displayed such flexibility, with fishes possessing highly tapered pectoral fins and high levels of swimming performance continuing to successfully navigate reef habitats without significantly altering their swimming behaviour. We highlight how labile behaviours augment the morphology and performance of species to underpin their occupation of habitats subject to variable environmental conditions.     

Influence of corallivory, competition, and habitat structure on coral community shifts

The species composition of coral communities has shifted in many areas worldwide through the relative loss of important ecosystem engineers such as highly branched corals, which are integral in maintaining reef biodiversity. We assessed the degree to which the performance of recently recruited branching corals was influenced by corallivory, competition, sedimentation, and the interactions between these factors. We also explored whether the species-specific influence of these biotic and abiotic constraints helps to explain recent shifts in the coral community in lagoons of Moorea, French Polynesia. Population surveys revealed evidence of a community shift away from a historically acroporid-dominated community to a pocilloporid- and poritid-dominated community, but also showed that the distribution and abundance of coral taxa varied predictably with location in the lagoon. At the microhabitat scale, branching corals grew mainly on dead or partially dead massive Porites ("bommies"), promontories with enhanced current velocities and reduced sedimentation. A demographic study revealed that growth and survival of juvenile Pocillopora verrucosa and Acropora retusa, the two most common branching species of each taxon, were affected by predation and competition with vermetid gastropods. By 24 months of age, 20-60% of juvenile corals suffered partial predation by corallivorous fishes, and injured corals experienced reduced growth and survival. A field experiment confirmed that partial predation by corallivorous fishes is an important, but habitat-modulated, constraint for branching corals. Competition with vermetid gastropods reduced growth of both branching species but unexpectedly also provided an associational defense against corallivory. Overall, the impact of abiotic constraints was habitat-specific and similar for Acropora and Pocillopora, but biotic interactions, especially corallivory, had a greater negative effect on Acropora than Pocillopora, which may explain the local shift in coral community composition.     

Lag Effects in the Impacts of Mass Coral Bleaching on Coral Reef Fish, Fisheries, and Ecosystems

Abstract:  Recent episodes of coral bleaching have led to wide-scale loss of reef corals and raised concerns over the effectiveness of existing conservation and management efforts. The 1998 bleaching event was most severe in the western Indian Ocean, where coral declined by up to 90% in some locations. Using fisheries-independent data, we assessed the long-term impacts of this event on fishery target species in the Seychelles, the overall size structure of the fish assemblage, and the effectiveness of two marine protected areas (MPAs) in protecting fish communities. The biomass of fished species above the size retained in fish traps changed little between 1994 and 2005, indicating no current effect on fishery yields. Biomass remained higher in MPAs, indicating they were effective in protecting fish stocks. Nevertheless, the size structure of the fish communities, as described with size-spectra analysis, changed in both fished areas and MPAs, with a decline in smaller fish (<30 cm) and an increase in larger fish (>45 cm). We believe this represents a time-lag response to a reduction in reef structural complexity brought about because fishes are being lost through natural mortality and fishing, and are not being replaced by juveniles. This effect is expected to be greater in terms of fisheries productivity and, because congruent patterns are observed for herbivores, suggests that MPAs do not offer coral reefs long-term resilience to bleaching events. Corallivores and planktivores declined strikingly in abundance, particularly in MPAs, and this decline was associated with a similar pattern of decline in their preferred corals. We suggest that climate-mediated disturbances, such as coral bleaching, be at the fore of conservation planning for coral reefs.     

Effect of Macroalgal Expansion and Marine Protected Areas on Coral Recovery Following a Climatic Disturbance

Disturbance plays an important role in structuring marine ecosystems, and there is a need to understand how conservation practices, such as the designation of Marine Protected Areas (MPAs), facilitate postdisturbance recovery. We evaluated the association of MPAs, herbivorous fish biomass, substrate type, postdisturbance coral cover, and change in macroalgal cover with coral recovery on the fringing reefs of the inner Seychelle islands, where coral mortality after a 1998 bleaching event was extensive. We visually estimated benthic cover and fish biomass at 9 sites in MPAs where fishing is banned and at 12 sites where fishing is permitted in 1994, 2005, 2008, and 2011. We used analysis of variance to examine spatial and temporal variations in coral cover and generalized additive models to identify relations between coral recovery and the aforementioned factors that may promote recovery. Coral recovery occurred on all substrate types, but it was highly variable among sites and times. Between 2005 and 2011 the increase in coral cover averaged 1%/year across 21 sites, and the maximum increase was 4%/year. However, mean coral cover across the study area (14%) remained at half of 1994 levels (28%). Sites within MPAs had faster rates of coral recovery than sites in fished areas only where cover of macroalgae was low and had not increased over time. In MPAs where macroalgae cover expanded since 1998 there was no recovery. Where coral was recovering on granite reefs there was a shift in relative prevalence of colony life‐form from branching to encrusting species. This simplification of reef structure may affect associated reef fauna even if predisturbance levels of coral cover are attained. Efecto de la Expansión de Macroalgas y Áreas Marinas Protegidas sobre la Recuperación de Coral Después de una Perturbación Climática     

Possible effects of water pollution on the community structure of Red Sea corals

The community structure and species diversity of hermatypic corals was studied during 1969–1973, in two reef flats in the northern Gulf of Eilat, Red Sea: the reef flat of the nature reserve at Eilat, which is chronically polluted by oil and minerals, and a control reef, located 5 km further south, which is free from oil pollution. In 1969, the nature reserve and the control reef had similar coral community structure. In September, 1970, both reefs suffered approximately 90% mortality of corals, as a result of an unexpected and extremely low tide. In 1973 the control reef was “blooming” with a highly diverse coral community, while almost no signs of coral recolonization have been observed at the nature reserve, and it is significantly lower in diversity. It is suggested that phosphate eutrophication and chronic oil pollution are the major man-made disturbances that interfere with coral colonization of the reef flat at the nature reserve. Although no direct evidence is provided that oil damages hermatypic corals, the data strongly suggest that chronic oil spills prevent normal settlement and/or development of coral larvae. It is possible that chronic oil, pollution results in either one or a combination of the following: (1) damage to the reproductive system of corals; (2) decreased viability of coral larvae; (3) changes in some physical properties of the reef flat which interfere with normal settlement of coral larvae.     

Effects of Fishing on the Ecosystem Structure of Coral Reefs

Overfishing is considered one of the three most significant threats to coral reef ecosystems. Exponentially increasing human populations in the tropics have placed enormous demands upon reefs as a food source. At high intensities, termed ecosystem or Malthusian overfishing, fishing causes major direct and indirect effects on the community structure of fishes and other organisms. It reduces species diversity and leads to local extinctions not only of target species but also of other species not fished directly. Conceivably it could also lead to global extinctions. Loss of keystone species, such as predators of echinoderms, through fishing, can lead to major effects on reef processes, such as accretion of calcium carbonate. Ultimately, sustained heavy fishing may lead to loss of entire functional groups of species, resulting in impairment of the potentially important ecosystem functions provided by those groups. Overfishing has been shown to interact with other agents of disturbance to reduce the ability of reefs to recover from natural occurrences such as hurricanes. Effective management of fishing will require a deeper understanding of the effects of exploitation than we now possess. Research initiatives are underway to examine the responses of fish populations to fishing, generally responses to protection from fishing. There is, however, an urgent need to look beyond fish communities and to consider the entire reef ecosystem. Studies that integrate population and community biology with ecosystem processes will provide a much better understanding of the effects of biodiversity loss on reef function and will improve our ability to manage these complex systems.