Large-scale spatial variation in epilithic algal matrix cryptofaunal assemblages on the Great Barrier Reef

Spatial variation in the epilithic algal matrix (EAM) cryptofauna was investigated at three locations on the Great Barrier Reef: two inner shelf—Orpheus Island and the Turtle Island group—and a mid-shelf location, Lizard Island. Although the EAM appears to be a relatively simple and consistent habitat, significant differences in cryptofaunal assemblages were found between locations. EAM assemblages from Orpheus Island were markedly different. This appears to be a function of the sediment profile characteristics (grain size >60 µm) at Orpheus Island, as many cryptofaunal taxa displayed positive relationships with sediment volume. However, sediment volumes did not differ significantly between the three locations, highlighting the possibility of cyclonic activity affecting the sediment profile at Orpheus Island in the months preceding the study, in addition to the nutrient input from major terrigenous sources. The results of this study show that EAM cryptofaunal assemblages are not uniform across the Great Barrier Reef and suggest that dissolved nutrients, sediment loads and distance from river systems may be significant drivers of cryptobenthic faunal compositions.     

Lipids and fatty acid composition of particulate matter in the North Atlantic: importance of spatial heterogeneity,season and community structure

Lipid class profiles and total fatty acid composition of particulate matter were studied in the northeast Atlantic during the spring bloom and fall. Eddies of known physical and chemical properties were sampled at different depths. HPLC pigment data were used to characterize the phytoplankton communities. In spring, a dominance of prymnesiophytes was recorded at all depths, while in fall prochlorophytes dominated near the surface and prymnesiophytes only at deep chlorophyll maximum. Lipid classes included triglycerides, sterols, glycolipids and phospholipids. A differential relationship between phytoplankton abundance and lipid accumulation was observed: spring lipid concentrations were positively related to phytoplankton biomass, while fall particulate lipid did not show any relationship. The main feature was a northward increase in lipid concentrations unrelated to the mesoscale hydrological structures. Polar lipids dominated over neutral acyl-glycerols with phospholipids dominating over glycolipids in spring, while glycolipids dominated in fall. This resulted from different nutrient availability with a dominance of flagellates associated with mesotrophy in spring and of picophytoplankton associated with oligotrophy in fall. In terms of fatty acids, factorial correspondence analyses illustrate the influence of seasonally changing assemblages: (1) in spring, the main source of variability was the bloom with an opposition between bloom sites characterized by n-3 and n-6 PUFA, and more detrital deep samples characterized by saturated, monoenoic and branched acids; (2) fall fatty acid profiles were similar at all depths and very close to those observed for spring deep samples. Comparison of pigment and fatty acids using redundancy analysis suggested that pelagophytes were linked to saturated and branched acids. It also showed that prymnesiophytes and prochlorophytes were significantly associated with n-6 and n-3 PUFA. The spring period illustrated the complexity of these relationships with dinoflagellates and prymnesiophytes linked with n-3 PUFA, diatoms linked with palmitoleic and myristic acids, and pelagophytes linked with n-6 PUFA and higher-chain-length monoenes.     

Exceptionally high concentrations of the insect repellent N,N-diethyl-m-toluamide (DEET) in surface waters from Jakarta,Indonesia

Jakarta is a booming coastal megacity in Indonesia with over 10 million inhabitants. The rivers flowing through the city district receive enormous amounts of untreated wastewaters from households and industries and discharge high pollutant loads into Jakarta Bay. Applying a screening approach for the identification of characteristic site-specific and harmful organic contaminants, we frequently found the insect repellent N,N-diethyl-m-toluamide (DEET) in river water and seawater samples from Jakarta. The compound was previously reported as persistent aquatic contaminant in industrial countries, and we present here the first data set from a tropical megacity. Concentrations in river water and seawater from Jakarta were exceptionally high, up to 24,000 ng L^?1, and exceeded by far all published concentrations in surface waters worldwide. We explained this with massive usage of the compound, lack of wastewater treatment and low average river flow as compared to rivers in other tropical megacities. The usage and properties of DEET indicate its suitability as molecular marker of municipal wastewaters. Such markers are useful to trace emissions from specific pollution sources in aquatic systems as a basis for the investigation of related impacts. We show here that DEET is in particular useful to trace the long-range distribution of municipal wastewaters in tropical freshwater and coastal systems. This application is of great value for tracing such inputs in tropical coastal habitats which are sensitive to changing water quality like coral reefs. This assists to uncover whether specific conditions in these systems could be related to pollutant inputs from land.     

Dimethyl disulfide and dimethyl trisulfide: so similar yet so different in evoking biological responses in saprophilous flies

Dimethyl disulfide (DMDS) and dimethyl trisulfide (DMTS) are used by saprophilous insects to locate breeding sites (decaying organic matter), and by brood-site deceptive flowers to attract such insects. However, little is known about the relative importance of these two compounds in eliciting electrophysiological and behavioral responses in the insects. Here, we compared the relative attractiveness of DMDS and DMTS to saprophilous flies in field choice experiments and tested whether potential differences in field responses can be explained by differences in electrophysiological antennal responses to these compounds. Field experiments revealed that the attractiveness of a mixture of these compounds is due to DMTS alone. This result was confirmed by electroantennographic recordings in which flies of four tested species of Calliphoridae (Lucilia sericata, L. caesar, Calliphora vicina, Protocalliphora azurea) and one Muscidae (Musca domestica) respond clearly to DMTS, but not to DMDS. In house flies, however, DMTS elicited electrophysiological responses only, not reflected in behavioral assays. Despite the fact that DMTS and DMDS exhibit similar chemical structures, both the electroantennographic and field responses from saprophilous flies to these two compounds strongly differed. Our study suggests that oligosulfide-responsive saprophilous flies rely on DMTS and not DMDS for finding appropriate breeding sites and that DMTS and not DMDS could act as a key mediator for pollinator attraction in brood-site deceptive plants.     

Hierarchical modeling of abundance in closed population capture–recapture models under heterogeneity

Hierarchical modeling of abundance in space or time using closed-population mark-recapture under heterogeneity (model \(\hbox {M}_{\text {h}}\) ) presents two challenges: (i) finding a flexible likelihood in which abundance appears as an explicit parameter and (ii) fitting the hierarchical model for abundance. The first challenge arises because abundance not only indexes the population size, it also determines the dimension of the capture probabilities in heterogeneity models. A common approach is to use data augmentation to include these capture probabilities directly into the likelihood and fit the model using Bayesian inference via Markov chain Monte Carlo (MCMC). Two such examples of this approach are (i) explicit trans-dimensional MCMC, and (ii) superpopulation data augmentation. The superpopulation approach has the advantage of simple specification that is easily implemented in BUGS and related software. However, it reparameterizes the model so that abundance is no longer included, except as a derived quantity. This is a drawback when hierarchical models for abundance, or related parameters, are desired. Here, we analytically compare the two approaches and show that they are more closely related than might appear superficially. We exploit this relationship to specify the model in a way that allows us to include abundance as a parameter and that facilitates hierarchical modeling using readily available software such as BUGS. We use this approach to model trends in grizzly bear abundance in Yellowstone National Park from 1986 to 1998.     

Effects of habitat fragmentation on the genetic structure and connectivity of the black-lipped pearl oyster Pinctada margaritifera populations in French Polynesia

Habitat destruction leading to increased fragmentation is detrimental to species by reducing population size and genetic diversity and by restraining population connectivity. However, little is known about the effects of naturally fragmented habitats on wild populations, especially when it comes to marine benthic invertebrates with long pelagic larval duration. In this framework, we investigated the connectivity and genetic diversity variation among nine wild populations of the black-lipped pearl oyster, Pinctada margaritifera, throughout French Polynesia using ten microsatellite DNA markers. Despite the naturally fragmented habitat (South Pacific oceanic islands), we found high values of genetic diversity and population admixture, indicating connectivity at small and large spatial scales within sampled sites of the Tuamotu, and between the Society and Tuamotu Archipelagos. In the meantime, habitat geomorphology increased genetic drift in populations occurring in small, closed lagoons. Significant genetic structure not correlated to geographic distance was detected mainly between closed and open lagoons. The Marquesas Islands hosted the most divergent populations, likely a result of vicariance. Our results also highlight that migration patterns among lagoons are not symmetrical. Altogether, the general pattern of gene flow, nonsymmetrical migration rates among populations, absence of isolation by distance and absence of recent extinction events found in our study strongly suggest that P. margaritifera populations of French Polynesia follow an asymmetrical island model of dispersal.     

Effects of gamma-aminobutyric acid on the settlement of larvae of the black chiton Katharina tunicata

Laboratory-cultured larvae of the black chiton Katharina tunicata (Wood), collected from central California in May and June of 1979 and 1980, settled preferentially on the encrusting coralline alga Lithothamnium sp. Metamorphosis, which involves the loss of the prototrochal ciliary band, occurred within a period of 2.5 h after larvae began crawling upon the alga. In response to gamma-aminobutyric acid (GABA) at a concentration of 10^-6 M, the lecithotrophic trochophore larvae ceased swimming and settled rapidly. Developmental metamorphosis did not follow settlement in the absence of encrusting coralline alga. However, when both GABA and Lithothamnium sp. were present, larval metamorphosis occurred within 2 h of settlement. Significantly different rates of settlement exist for sibling larvae of different ages; 12 d-old larvae responded more rapily and in greater numbers to treatment with GABA than 10 d-old larvae. Differences in settling rates are attributed to the onset of metamorphic competence.     

Resin embedments of quantitative meiofauna samples for ecological and structural studies — Description and application

In enumerating data for systematic and ecological studies on meiofauna, an unfortunate diversification exists in the methods used for observation, identification, preservation and curatorial treatment of various taxa. The application of transmission electron microscopy resin embedment techniques to whole, quantitative, extracted meiofauna samples is described here as a new method, which overcomes most of these problems. Slide-shaped resin blocks are produced by this method; they contain the mass-embedded meiofauna on one side and sand from the sample site on the other side; the latter can be used in studying sand-grain epigrowth of Protista, Fungi and Monera. Examples for the applicability of these slides to various meiobenthic studies are given for most taxa, but especially for Turbellaria, Annelida and Mystacocarida. Using this resin-slide technique, whole quantitative transects can be deposited as “ecotype material” in museums.     

Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John,US Virgin Islands

The exchange of Symbiodinium symbionts among scleractinian and soritid hosts could facilitate acclimatization to changing conditions by establishing novel symbiotic unions better tuned to prevailing conditions. In this study, we compare the communities of Symbiodinium spp. in neighboring populations of Orbicella annularis and Sorites orbiculus from St. John, US Virgin Islands, using operational taxonomic unit (OTU) clustering of cloned internal transcribed spacer 2 (ITS-2) rDNA sequences. We tested for partitioning of Symbiodinium OTUs by host and depth within and between two sites to explore the potential for symbiont exchange between hosts and light-dependent microhabitat specialization. An apparent lack of overlap in Symbiodinium communities (13 OTUs representing 7 clades) hosted by O. annularis and S. orbiculus suggests that exchange among these hosts does not occur. A low number of novel clade G ITS-2 sequences were found in one O. annularis and one S. orbiculus. A phylogenetic analysis of these sequences revealed them to be sub-clade G2 Symbiodinium, which are most commonly hosted by excavating clionid sponges. A permutational MANOVA revealed within host differences in the partitioning of Symbiodinium OTUs by site but not depth. This finding highlights the potential roles of either dissimilar environmental conditions between sites, or at least partial separation between populations, in determining the types of Symbiodinium contained in different hosts on a spatial scale of a few kilometers.     

A light and electron microscope investigation of gametogenesis in Nicolea zostericola (Polychaeta: Terebellidae)

A light and electron microscope study was conducted on Nicolea zostericola (Oersted: Grube, 1860) to describe the processes of gametogenesis. N. zostericola is a monotelic species which spawns from 2 to 5 times over a period of 2 weeks at the end of its 1-year life span. The gonads consist of plates of cells bulging from beneath the peritoneum in the thoracic region of the body. Oogenesis has been divided into 3 phases: an ovarian phase in which gametogonia and primary oocytes are retained within the ovary, a follicular phase, in which oocytes are ovulated into the coelom surrounded by several layers of follicle cells and the vitellogenic phase, where individual oocytes rupture through the follicle cells and enter the coelomic fluid where cell growth and yolk synthesis occur. The combined ovarian and follicular phases have a duration of about 3 to 5 weeks and the vitellogenic phase about 5 to 6 months. Vitellogenesis is described on the ultrastructural level. Yolk synthesis involves the participation of the Golgi apparatus and endoplasmic reticulum of the oocyte in possible combination with nutrient absorption from the coelomic fluid. Spermatogenesis involves the rupturing of masses of spermatogonia into the coelom from the testis, surrounded by peritoneal cells. Smaller clusters of spermatocytes are later released into the coelomic fluid where mitotic and meiotic divisions eventually produce flattened plates of sperm. The mature spermatozoan possesses an elongate head, atypical for most polychaetes.     

Soil and plant concentrations of cadmium and zinc in the vicinity of a smelter

Cadmium, zinc and lead concentrations in soils and plants near a smelter at Avonmouth are reported for samples collected in May 1979 and in May 1980. The total metal soil concentrations fall as distance from the smelter increases and decrease rapidly with depth for cadmium and zinc. The concentrations of these two metals are highly correlated at all depths. Near the smelter, where the carbon content and pH values of the soils are lowest, almost all the cadmium, as measured by EDTA extraction, is available. Concentration of metals in plants also decrease with distance from the smelter, with concentrations being lower in samples collected in 1980. This is possibly due to a seasonal variation in biomass, producing a dilution effect. We conclude that uptake of cadmium and that of zinc by grass species have different relationships to the carbon content of the soil.     

Reducing the environmental impact of coal-washing practice in Australia

All Australian coal for export is washed — that is, the low-grade high-ash material is separated out and disposed of at the washery site. The coarse rejects are generally placed in embankments and the tailings are pumped into settling ponds. These methods of waste disposal can create environmental problems. In addition, they represent a significant energy loss, because about one-third of the waste material is combustible and is thus a potentially valuable source of energy. Laboratory studies at the CSIRO Division of Fossil Fuels at North Ryde, New South Wales, have shown that energy can be successfully recovered from washery wastes by the process of fluidized-bed combustion. A pilot fluidized-bed combustor, with a capacity of 2 tonnes/hour, is undergoing prolonged trial at the Clutha washery near Camden, New South Wales, in a joint project between the Joint Coal Board and CSIRO. The results from the pilot plant tests have provided the basis for a conceptual design and feasibility study for a full-scale tailings treatment plant. This study has indicated that fluidized-bed combustion:

1. offers an environmentally attractive and economically competitive alternative to the disposal of tailings in settling ponds, and
2. can be used to generate large quantities of energy from the wastes, reducing the energy lost in coal washing from around 16% to 6% of the coal mined.

     

Estimation of coral growth-rates from laboratory 45Ca-incorporation rates

Laboratory ⁴⁵Ca-incorporation rates in hermatypic coral skeletons have previously been used successfully as an index of physiological function. This laboratory method would become more meanigful if it also provided an absolute measure of coral growth rates. In two coral species, Porites compressa and Pocillopora damicornis, ⁴⁵Ca incorporation rates were obtained from short (0.5 h) laboratory incubations using apical (determined as fast growing) portions of freshly collected coral branches. ⁴⁵Ca exchange across the coenosarc was not significant and not corrected for, whereas diurnal fluctuation in ⁴⁵Ca in Pocillopora damicornis was significant and a necessary correction. A calculated surface area is used to express calcification rate. Typical growth rates calculated from the ⁴⁵Ca-incorporation rates were 20 and 6 mm/year for Porites compressa and Pocillopora damicornis, respectively. These rates are considerably higher than those previously obtained in the laboratory, and compare favorably with field growth rates — 24 and 14 mm/year, respectively.     

Ecology of the northern Red Sea crinoids and their Epi- and Endozoic fauna

Fourteen crinoid species are found along the coral reefs of the northern Red Sea that form aggregations of different species at various depths. The shallowest aggregation consists partly of Lamprometra klunzingeri and Capillaster multiradiatus, occurring subtidal to a depth of 2 to 5 m. Of this group, Heterometra savignii inhabits depths down to 12–15 m. Further down, another group of 10-armed crinoids occurs, dominated by Decametra chadwicki and Oligometra serripinna. The deepest aggregation of crinoids occurs at 45 m; its most common members are Colobometra arabica and Comaster distinctus. Feeding on micro- and nanoplankton, shallow-water crinoids show a circadian activity rhythm; in deeper aggregations (10 to 12 m), this behaviour changes with decreasing illumination, to a diurnal activity rhythm. The symbiotic animals living on crinoids comprise 27 taxons, among them Copepoda (6 species), Mollusca (2 species), Polychaeta (11 species, especially Myzostomida); Ophiurida (1 species), Crustacea, Decapoda (6 species); and the clingfish Lepadichthys lineatus. These symbiotic animals form food webs at various depths, according to the distribution of their crinoid host. The occurrence of Indo-West Pacific and Mediterranean commensals on the same crinoid in the Gulf of Aqaba is of special interest.     

Isolation of a new toxin from the sponge Latrunculia magnifica in the Gulf of Aquaba (Red Sea)

The sponge Latrunculia magnifica was found to be toxic for fish. A toxin has been isolated from this sponge by organic extraction-column chromatography and thin-layer chromatography. Several chemical properties of the toxin were determined by spectroscopic analysis. Toxicity tests were performed on the fish Gambusia affinis. In vitro experiments showed the toxin to be a cholinesterase inhibitor.     

New epizooic symbioses between sponges of the genera Plakortis and Xestospongia in cryptic habitats of the Caribbean

Three new cases of sponge symbiosis between species of Plakortis and Xestospongia were found in reef caves and mesophotic reef habitats of the Caribbean. Plakortis sp. 1 from the Bahamas associates exclusively with Xestospongia deweerdtae which was originally described living freely on the deep fore-reef and caves of Jamaica. In addition, we found Plakortis sp. 2 from Puerto Rico which associates with both X. deweerdtae and a different Xestospongia sp. Sponge specimens were identified using cytochrome oxidase subunit 1, 28S rRNA and 18S rRNA gene sequence fragments, spicule analysis, and histological sections with SEM. Unlike previous sponge pairs, Xestospongia spp. not only grew as a thin veneer of tissue over the Plakortis host sponge but through the mesohyl, forming inner channels (0.1–1 cm) that may provide a benefit by facilitating more efficient water transport through the dense Plakortis tissue. Symbioses with both Plakortis spp. were documented from an early recruit stage through adulthood. Spicule measurements conducted on symbiotic versus free-living X. deweerdtae revealed significantly smaller spicule sizes for symbiotic individuals, suggesting a cost in terms of silicon availability, or a benefit in terms of a lower investment in skeleton synthesis for support. This study reveals new specialized symbiotic associations between distantly related sponge genera that likely represent an alternative strategy of adaptation for life in reef caves and mesophotic reefs.     

One-step synthesis of bentonite-supported nanoscale Fe/Ni bimetals for rapid degradation of methyl orange in water

Although nanoscale zero-valent iron (nano-Fe⁰) is used to remediate pollutants, this reagent still presents stability and reactivity issues. To solve those issues, we synthesized bentonite-supported nanoscale iron bimetals B-Fe/Ni and B-Fe/Pd. We then used those reagents to degrade the methyl orange dye in water. Results of scanning electron microscopy and X-ray diffraction showed that the presence of bentonite and bimetal decreased nanoscale iron aggregation and increased methyl orange removal efficiency. More than 90 % of methyl orange at 100 mg/L was degraded by B-Fe/Ni (0.15 g/L) in 10 min. By comparison, only 62 % of methyl orange was degraded by B-Fe, and 35 % of methyl orange was degraded by nano-Fe⁰. The degradation rate decreased with the increase of the initial concentration of methyl orange. Lower pH allowed fast removal of methyl orange. Overall our findings show that a nanoscale Fe/Ni on bentonite-supported material is more efficient than nano-Fe⁰. One-step synthesis is more convenient than current two-step-synthesized nanoscale bimetals. Bentonite-supported nanoscale bimetals could therefore be an economic competitive candidate for contaminated water remediation.     

Detrital pathways in a coral reef lagoon

Coral reef lagoons are generally regarded as zones of net heterotrophy reliant on organic detritus generated in more productive parts of the reef system, such as the seaward reef flat. The abundance and biomass of sediment infauna were measured seasonally for one year (1986) within the lagoon of Davies Reef, central Great Barrier Reef, to test the hypothesis that macrofaunal biomass and production of coral reef lagoons would decrease with distance from the reef flat and would change seasonally. In general, there were no simple relationships between infaunal standing stock or production and distance from the reef flat or season. Bioturbation by callianassid shrimps negatively affected the abundance of smaller infauna, suggesting a community limited by biogenic disturbance rather than by supply of organic material. Polychaetes and crustaceans were dominant amongst the smaller infauna (0.5 to 2mm) while larger animals (> 2 mm) were mostly polychaetes and molluscs. Mean biomass of infauna at both sites and all seasons was 3 181 mg C m^?2. The smaller animals (0.5 to 2 mm) contributed about 40% of total macrofaunal respiration and production although they represented only 15% of the total macrofaunal biomass. The biomass of macrofauna was about equal to that of the bacteria and meiofauna, while respiration represented 10 to 20% of total community respiration. Consumption by macrofauna accounts for only 3 to 11% of total organic inputs to sediment, with a further 14 to 17% being lost by macrofaunal respiration.     

Comparison of sterol composition of some Baltic Sea and Black Sea mussels

Sterol composition of three Baltic Sea mussels (Mytilus edulis, Cardium glaucum, Mya arenaria) was compared with the sterol composition of three biologically closely related mussels from the Black Sea (Mytilus galloprovincialis, Cardium edule, Mya arenaria). The qualitative sterol composition of the mussels studied was similar, but some quantitative differences were found.