Molecular biodiversity. Case study: Porifera (sponges)

Biological diversity--or biodiversity--is the term given to the variety of life on Earth and the natural patterns it forms. The biodiversity we see today is the fruit of billions of years of evolution, shaped by natural processes and, increasingly, by the influence of humans. It forms the web of life of which we are an integral part and upon which we so fully depend. The research on molecular biodiversity tries to lay the scientific foundation of a rational conservation policy that has its roots in various disciplines including systematics/taxonomy (species richness), present day ecology (diversity of ecological systems), and functional genetics (genetic diversity). The results of ongoing genome analyses (genome projects and expressed sequence tag projects) and the achievements of molecular evolution may allow us not only to quantitate the diversity of the present biota but also to extrapolate to their diversification in the future. A link between biodiversity and genomics/molecular evolution will create a platform which we hope may facilitate a sustainable management of organismic life and ensure its exploitation for human benefit. In the present review we outline possible strategies, using the Porifera (sponges) as a prominent example. On the basis of solid taxonomy and ecological data, the high value of this phylum for human application becomes obvious, especially with regard to the field of chemical ecology and the desire to find novel potential drugs for clinical use. In addition, the benefit of trying to make sense of molecular biodiversity using sponges as an example can be seen in the fact that the study of these animals, which are "living fossils", gives us a good insight into the history of our planet, especially with respect to the evolution of Metazoa.     

大气中多环芳烃气固相分配与颗粒物粒径的关系

采集了2005年5月16日～6月3日上海市桃浦地区气相样品、TSP样品及不同粒径的颗粒物样品.用GC-MS对各样品中美国EPA规定优先控制的16种多环芳烃(PAHs)做了定量分析.结果表明,大气中PAHs的气固相分配系数(KP)和各物质的过冷饱和蒸气压(pl⁰)呈良好的线性相关.多元线性回归分析表明,PAHs的气固相分配受颗粒物粒径大小的影响,粒径越大,对PAHs的气固相分配影响越大;过冷饱和蒸气压越高,气固相分配越易受到粒径大小的影响.     

Influence of particle size and salinity on adsorption of basic dyes by agricultural waste： dried Seagrape （Caulerpa lentiUifera）

Green macroalga Caulerpa lentillifera was found to have reasonable adsorption capacity for basic dyes, Astrazon Blue FGRL （AB）, Astrazon Red GTLN （AR）, and Astrazon Golden Yellow GL-E （AY）. The initial dye concentration was in the range of 100-1,800 mg/L. The dried algal sorbent was ground and sieved into 3 sizes： S （0.1-0.84 mm）, M （0.84-2.0 mm）, and L sizes （larger than 2.0 mm）. For all conditions examined in this work （at 25℃ in batch systems）, the adsorption reached equilibrium within the first hour. The kinetic data corresponded well with the pseudo second order kinetic model where the rate constant, k2, decreased as the sorbent size increased for all dyes. The adsorption isotherms followed both Langmuir and Freundlich models. Among three sorbent sizes, S size gave the highest adsorption capacity followed by M and L sizes. A reduction of sorbent size increased the specific surface area for mass transfer, and also increased the total pore volume, thus providing more active sites for adsorption. The adsorption of AB was adversely influenced by the protonation of algal surface at low pH. On the other hand, the adsorption of AR and AY could be due to weak electrostatic interaction, which was not significantly affected by pH. Increasing salinity of the system caused a decrease in adsorption capacity possibly due to the competition between Na^＋ and the dye cations for the binding sites on algal surface. Moreover, an increase in salinity generated a compressed electrical double layer on the algal surface which exerted repulsive force, retarding the adsorption of positive charged molecules such as the basic dyes.     

Genotypic, size and morphological diversity of virioplankton in a deep oligomesotrophic freshwater lake (Lac Pavin, France)

We examined changes in morphological and genomic diversities of viruses by means of transmission electronic microscopy and pulsed field gel electrophoresis(PFGE) over a nine-month period(April–December 2005) at four different depths in the oligomesotrophic Lac Pavin. We found that the majority of viruses in this lake belonged to the family of Siphoviridae or were untailed, with capsid sizes ranging from 30 to 60 nm, and exhibited genome sizes ranging from 15 to 45 kb. On average, 12 different genotypes dominated each of the PFGE fingerprints. The highest genomic viral richness was recorded in summer(mean = 14 bands per PFGE fingerprint) and in the epilimnion(mean = 13 bands per PFGE fingerprint). Among the physico-chemical and biological variables considered, the availability of the hosts appeared to be the main factor regulating the variations in the viral diversity.     

Nest sanitation through defecation: antifungal properties of wood cockroach feces

The wood cockroach Cryptocercus punctulatus nests as family units inside decayed wood, a substrate known for its high microbial load. We tested the hypothesis that defecation within their nests, a common occurrence in this species, reduces the probability of fungal development. Conidia of the entomopathogenic fungus, Metarhizium anisopliae, were incubated with crushed feces and subsequently plated on potato dextrose agar. Relative to controls, the viability of fungal conidia was significantly reduced following incubation with feces and was negatively correlated with incubation time. Although the cockroach's hindgut contained abundant β-1,3-glucanase activity, its feces had no detectable enzymatic function. Hence, these enzymes are unlikely the source of the fungistasis. Instead, the antifungal compound(s) of the feces involved heat-sensitive factor(s) of potential microbial origin. When feces were boiled or when they were subjected to ultraviolet radiation and subsequently incubated with conidia, viability was “rescued” and germination rates were similar to those of controls. Filtration experiments indicate that the fungistatic activity of feces results from chemical interference. Because Cryptocercidae cockroaches have been considered appropriate models to make inferences about the factors fostering the evolution of termite sociality, we suggest that nesting in microbe-rich environments likely selected for the coupling of intranest defecation and feces fungistasis in the common ancestor of wood cockroaches and termites. This might in turn have served as a preadaptation that prevented mycosis as these phylogenetically related taxa diverged and evolved respectively into subsocial and eusocial organizations.     

Miniaturization,genome size and the origin of functional constraints in the visual system of salamanders

During their evolution, many species of lungless salamanders (fam. Plethodontidae) have experienced a great increase in genome size and consequently in the size of their cells, including sensory receptors and neurons. In addition, some have become extremely miniaturized. The consequences of these events and the morphological compensatory processes are studied in the visual system of juvenile and adult salamanders.     

Spatial distribution of polychlorinated biphenyls in soil around a municipal solid waste incinerator

The impact of a typical municipal solid waste incinerator (MSWI) on polychlorinated biphenyl (PCB) concentrations in the surrounding soil was studied. Six stack gas samples were taken from the MSWI and 21 soil samples were collected from sampling sites between 300 and 1700 m from the MSWI stack. The total (∑PCB) concentrations of dioxin-like (dl) PCBs and indicator PCBs in the stack gas samples were between 3.41 and 34.3 ng/m3, and the corresponding toxic equivalents (TEQs) ranged from 4.45 to 66.9 pg WHO-TEQ/m3, with a mean of 28.6 pg WHO-TEQ/m3. A total of 2.43 g WHO-TEQ of PCBs per year was calculated to be released into the environment from MSWIs in China. The ∑PCB concentrations in the soil samples ranged from 28.0 to 264.4 pg/g, with mean and median values of 127.6 and 127.7 pg/g, respectively, while the TEQ values were between 0.020 and 0.18 pg WHO-TEQ/g, with mean and median values of 0.074 and 0.062 pg WHO-TEQ/g, respectively. Comparing this study with other studies performed around the world suggest that PCB emission from incinerators has a critical influence on PCB concentrations in the surrounding soil. An exponential function equation is proposed, which indicates a clear decline in ∑PCB concentrations with increasing distance from the stack. A contour map created using an ordinary kriging interpolation technique showed that a limited area (1250 m radius) from the stack was clearly influenced by PCB emission from the MSWI.     

Sperm competition promotes diversity of sperm bundles in <Emphasis Type="Italic">Ohomopterus</Emphasis> ground beetles

Diversification of sperm morphology has been investigated in the context of sperm competition, but the adaptive significance of sperm bundles is still unclear. In analyzing 10 taxa of the genus Carabus subgenus Ohomopterus and one related Carabus ground beetles, we found that dimorphic sperm bundles occurred in most species with varied degrees of bimodality, whereas sperm were generally monomorphic. Comparative analyses with phylogenetically independent contrasts revealed that the sizes of large and small sperm bundles evolved more rapidly than, and were not correlated with, the length of sperm, suggesting more intense selection on sperm bundle sizes and their independent responses to different evolutionary forces. The size of large sperm bundles was positively correlated with male genital morphology (pertinent to displacement of rival spermatophores) and postcopulatory guarding duration as well as male body length, suggesting that larger sperm bundles have been favored when the risk of spermatophore displacement is high. Larger sperm bundles may be advantageous because of their ability to migrate more rapidly into the spermatheca. In contrast, no clear association was detected between the small sperm bundle size and mating traits despite its rapid diversification. The present study provides the first record of heteromorphic sperm bundles, the diversity of which may be promoted by sperm competition.     

深圳市龙岗区大气颗粒物中多溴联苯醚的污染特征研究

为了解深圳市龙岗区大气颗粒物中多溴联苯醚的污染状况,于2017年1月、4月、8月和11月分别采集龙岗区大气颗粒物样品.利用气相色谱-质谱联用仪（GC/MS）对深圳市龙岗区4个功能区（工业区、商业区、居民区和生态区）的80个大气颗粒物样品进行检测,得到PBDEs（多溴联苯醚）8种单体（BDE-28、BDE-47、BDE-99、BDE-100、BDE-153、BDE-154、BDE-183、BDE-209）的质量浓度,同时研究了大气颗粒物中PBDEs质量浓度的时空分布特征.结果表明:①深圳市龙岗区大气颗粒物中ρ（∑₈PBDEs）（∑₈PBDEs为PBDEs 8种单体的加和）范围为0.07~77.80 pg/m3,ρ（∑₈PBDEs）年均值为（6.86±14.17）pg/m3.ρ（BDE-209）范围为0.01~76.23 pg/m3,年均值为（5.10±13.58）pg/m3,BDE-209为主要污染单体.② 4个功能区的ρ（∑₈PBDEs）平均值大小顺序依次为工业区（13.65 pg/m3）>商业区（7.75 pg/m3）>生态区（3.95 pg/m3）>居民区（2.19 pg/m3）,工业区是环境空气颗粒物中PBDEs的主要污染区.③ ρ（∑₈PBDEs）平均值的季节性变化规律为春季（13.32 pg/m3）>冬季（9.18 pg/m3）>秋季（2.17 pg/m3）>夏季（1.51 pg/m3）,符合深圳市亚热带海洋季风气温和气候对环境空气中颗粒物质量浓度的影响规律.研究显示,深圳市龙岗区大气颗粒物中PBDEs质量浓度处于较高水平,污染严重,建议减少含PBDEs产品的生产、使用和运输等活动,或找到更利于环境安全和人体健康的替代品,降低PBDEs对该地区的污染.      

The attractiveness fragment—AFLP analysis of local adaptation and sexual selection in a caeliferan grasshopper, <Emphasis Type="Italic">Chorthippus biguttulus</Emphasis>

Genetic variability among males is a necessary precondition for the evolution of female choice based on indirect genetic benefits. In addition to mutations and host–parasite cycles, migration of locally adapted individuals offers an explanation for the maintenance of genetic variability. In a previous study, conducting a reciprocal transplant experiment on a grasshopper, Chorthippus biguttulus, we found that environmental conditions significantly influenced not only body condition but also an important trait of male calling song, the amplitude of song. Although not significant, all other analysed physical and courtship song traits and attractiveness were superior in native than in transferred males. Thus, we concluded that local adaptation has a slight but consistent influence on a range of traits in our study populations, including male acoustic attractiveness. In our present study, we scanned male grasshoppers from the same two populations for amplification fragment length polymorphism (AFLP) loci connected with acoustic attractiveness to conspecific females. We found greater differences in allele frequencies between the two populations, for some loci, than are expected from a balance between drift and gene flow. These loci are potentially connected with locally adapted traits. We examined whether these alleles show the proposed genotype environment interaction by having different associations with attractiveness in the two populations. One locus was significantly related to sexual attractiveness; however, this was independent of the males’ population affiliation. Future research on the evolution of female choice will benefit from knowledge of the underlying genetic architecture of male traits under intraspecific sexual selection, and the ‘population genomics’ approach can be a powerful tool for revealing this structure.     

Alkaloid concentration of the invasive plant species Ulex europaeus in relation to geographic origin and herbivory

In the study of plant defense evolution, invasive plant species can be very insightful because they are often introduced without their enemies, and traits linked to defense can be released from selective pressures and evolve. Further, studying plant defense evolution in invasive species is important for biological control and use of these species. In this study, we investigated the evolution of the defensive chemicals quinolizidine alkaloids (QAs) in the invasive species gorse, Ulex europaeus. Using a common garden experiment, our goals were to characterize the role of QAs relative to specialist enemies of gorse and to investigate if QA concentration evolved in invaded regions, where gorse was introduced without these enemies. Our results showed that pod infestation rate by the seed predator Exapion ulicis and infestation by the rust pathogen Uromyces genistae-tinctoriae were negatively correlated to concentration of the QA lupanine. Quinolizidine alkaloid concentration was very variable between individuals, both within and among populations, but it was not different between native and invaded regions, suggesting that no evolution of decreased resistance occurred after gorse lost its enemies. Our study also suggests that QA concentrations are traits integrated into seed predation avoidance strategies of gorse, with plants that mass-fruit in spring but do not escape pod infestation in time being richer in QAs.     

Ecological selection of bacterial taxa with larger genome sizes in response to polycyclic aromatic hydrocarbons stress

Polycyclic aromatic hydrocarbons(PAHs) are ubiquitous priority pollutants that cause great damage to the natural environment and health. Average genome size in a community is critical for shedding light on microbiome’s functional response to pollution stress within an environment. Here, microcosms under different concentrations were performed to evaluate the selection of PAHs stress on the average genome size in a community. We found the distinct communities of significantly larger genome size w...     

Geographic variations of life history traits and potential trade-offs in different populations of the parasitoid Leptopilina heterotoma

Energy allocation is determined by resource availability and trade-offs among traits, and so organisms have to give some traits priority over others to maximize their fitness according to their environment. In this study, we investigated the geographic variations in life history traits and potential trade-offs in populations of the parasitoid Leptopilina heterotoma (Hymenoptera: Figitidae) originating from the north and the south of the Rh?ne–Sa?ne valley (over a gradient of 300?km, South-East France). We measured a set of traits related to reproduction, maintenance, and mobility using several estimators of each of these main functions determined at different times. We did not find any clear differences between populations from contrasting areas, whereas the southern populations, which were all assumed to be exposed to similar environmental conditions, displayed contrasting patterns of energy allocation. Thus, the most likely explanation seems to be that the evolution of the life history of L. heterotoma is probably shaped by local selective pressures, such as microclimate, microhabitats, or intensity of competition, rather than by regional ecological conditions. Using our study as an example, we discuss the interest of considering several traits and using different ways of measuring them, concluding that multiple measurements should be performed in future studies to ensure the robustness of the results.     

Cross-habitat variation in the phenology of a colonial spider: insights from a reciprocal transplant study

In species with widespread distribution, populations found in markedly different environments can show differences in developmental traits. This, in time, can have an effect on reproductive success. Sources of variation in developmental traits can be genetic or environmentally induced. I examined the relationship between environmental and genetic influences on juvenile development in populations of the colonial spider, Parawixia bistriata, located at sites with different moisture regimes and associated environmental variables (e.g., prey availability). It was expected that individuals from different populations would show differences in developmental traits and that those differences will be associated with lower reproductive success at dry sites. I recorded the phenology and developmental traits of native and transplanted individuals in the field and estimated reproductive success based on clutch size. Colonies from wet versus dry sites showed different phenologies, with individuals at dry sites maturing later. Transplant results suggest plasticity in instar duration caused by environmental effects. Despite differences in resources and spider phenology, clutch sizes of native dry and wet populations were similar. Transplanted individuals, however, were differentially affected. Transplants from wet to dry sites (WD) showed lower growth rates and smaller clutches, whereas transplants from dry to wet sites had larger clutch sizes than in native habitat. Delayed maturation and failure to reproduce in WD individuals is associated with a lower tendency to capture prey in groups and less aggressive interactions during prey capture. Thus, despite negative environmental effects on development, dry native individuals have evolved non-developmental traits that allow successful reproduction.     

Convergent life-history shifts: toxic environments result in big babies in two clades of poeciliids

The majority of studies on ecological speciation in animals have investigated the divergence caused by biotic factors like divergent food sources or predatory regimes. Here, we examined a system where ecological speciation can clearly be ascribed to abiotic environmental gradients of naturally occurring toxic hydrogen sulfide (H₂S). In southern Mexico, two genera of livebearing fishes (Poeciliidae: Poecilia and Gambusia) thrive in various watercourses with different concentrations of H₂S. Previous studies have revealed pronounced genetic differentiation between different locally adapted populations in one species (Poecilia mexicana), pointing towards incipient speciation. In the present study, we examined female reproductive life-history traits in two species pairs: Gambusia sexradiata (from a nonsulfidic and a sulfidic habitat) and Gambusia eurystoma (sulfide-endemic), as well as P. mexicana (nonsulfidic and sulfidic) and Poecilia sulphuraria (sulfide endemic). We found convergent divergence of life-history traits in response to sulfide; most prominently, extremophile poeciliids exhibit drastically increased offspring size coupled with reduced fecundity. Furthermore, within each genus, this trend increased with increasing sulfide concentrations and was most pronounced in the two endemic sulfur-adapted species. We discuss the adaptive significance of large offspring size in toxic environments and propose that divergent life-history evolution may promote further ecological divergence through isolation by adaptation.     

社会经济发展对永定河流域(北京段)与温榆河流域地下水的影响分析

以永定河流域（北京段）和温榆河流域为对象,通过历史数据收集、整理和统计分析,研究流域内地下水环境的历史变迁和社会经济发展对其的影响.结果表明,1978—2008年间永定河流域（北京段）和温榆河流域均存在地下水埋深加深、地下水资源和地下水开采量略增、地下水水质恶化的趋势.1940—2008年间两流域的地下水埋深、地下水资...     

上海市大气颗粒物中有机碳（OC）与元素碳（EC）的粒径分布

分析了上海市嘉定区不同粒径大气颗粒物(0.49、0.49～0.95、0.95～1.50、1.50～3.00、3.00～7.20、7.20μm)中OC和EC质量浓度的粒径分布特征;讨论了不同粒径大气颗粒物中二次有机碳EC示踪法中(OC/EC)pri的选定方法,用改进后的EC示踪法估算出上海市嘉定区大气颗粒物中的二次有机碳(SOC)质量浓度的粒径分布;通过OC和EC的相关性定性分析了上海市嘉定区大气颗粒物的主要来源.上海市嘉定区大气颗粒物中OC和SOC的质量浓度呈双峰分布,峰值出现在0.49μm与3.00μm的粒径段,EC出现双峰或三峰分布,与OC相比,更集中在0.49μm的粒径段.细颗粒(3.00μm)中OC和EC分别占总OC和EC质量浓度的59.8%～80.0%和58.1%～82.4%,OC和EC的质量浓度主要集中在3.00μm的颗粒物中.不同粒径颗粒物中SOC占相应粒径段内OC浓度的15.7%～79.1%,其中细颗粒物(3.00μm)和粗颗粒物(3.00μm)中SOC质量浓度占相应粒径段中OC的41.4%和43.5%.OC、EC和SOC的粒径分布显现出明显的时间依存性.OC和EC的相关性分析表明,上海嘉定区大气颗粒物的污染源主要以轻型汽油车尾气为主.     

Shell colour,temperature, (micro)habitat structure and predator pressure affect the behaviour of <Emphasis Type="Italic">Cepaea nemoralis</Emphasis>

Although shell colour polymorphism of the land snail Cepaea nemoralis is a well-known phenomenon, proximate and ultimate factors driving its evolution remain uncertain. Polymorphic species show variation in behavioural responses to selective forces. Therefore, we estimated effects of various environmental factors (temperature, humidity, food availability, (micro)habitat structure and predatory pressure) on behavioural response (frequency of locomotion, climbing and hiding) of C. nemoralis morphs, in experimental and natural conditions. In the experimental part of study, the frequency of locomotion was negatively affected by temperature and the presence of food and positively influenced by the presence of light. Morphs significantly differed in behavioural responses to environmental variability. Pink mid-banded and yellow five-banded morphs climbed less often and hide in shelter more often than yellow and pink unbanded individuals when temperature was low and food was absent. Snails fed most often at moderate temperature compared to low and high temperatures. Field investigations partially confirmed differences among morphs in frequency of climbing, but not in terms of probability of hiding in sheltered sites. In natural colonies, temperature and (micro)habitat structure significantly affected frequency of climbing as well as hiding in shelter. Snails more often hid in sheltered sites where thrushes preyed on Cepaea. Tendency of unbanded morphs to climb trees may have evolved under avian predatory pressure as thrushes forage on a ground. Tendency of banded morphs to hide in sheltered sites may reflect prey preferences for cryptic background. The results implicate that differential behaviour of C. nemoralis morphs compensate for their morphological and physiological limitations of adaptation to habitat.     

拉萨河全氟化合物的时空分布特征研究

对拉萨河27个采样点、拉萨污水处理厂分别在丰水期和枯水期进行水样的采集,并用双三元二维液相色谱-串联质谱法（DGLC-MS/MS）首次对水样中的17种全氟化合物（PFASs）进行检测分析,结果表明,PFASs在拉萨普遍存在,拉萨河表层水中平均Σ₁₃ PFASs浓度为322pg/L,范围从60到1724pg/L.拉萨河PFASs的浓度水平低于其他大城市流域,但高于南北极表层水体.拉萨河中的主要化合物为全氟丁酸（PFBA）（25%）、全氟戊酸（PFPeA）（22%）、全氟辛酸（PFOA）（14%）、全氟辛烷磺酸（PFOS）（14%）和全氟丁烷磺酸（PFBS）（13%）.空间分布特征表明,拉萨河中全氟化合物的排放还存在一些点排放源,拉萨市产生的污水并未完全汇入到拉萨市污水处理厂中处理.基于PFBA和PFBS的全氟产品使用比较广泛,而基于PFOA和PFOS的全氟产品只在某些区域或行业有相对多的使用量或排量.PFASs在丰水期和枯水期的浓度水平和组成特征有显著的差异,拉萨全氟化合物产品的生产和使用模式受季节影响较大.污水处理厂是PFASs排放到拉萨河中的一个重要点源.污水处理厂每年排放到拉萨河中的全氟化合物约为37mg,拉萨河排放到雅鲁藏布江的物质荷载约为292t/a.在未来,所有的废水都应严格地纳入污水处理厂经达标处理后再排放.尽管PFOA和PFOS在拉萨的生产和使用进行了一定的转型,但是基于全氟化合物的产品的限制应进一步系统地执行和强有力地落实.     

Paternal inheritance in mealybugs (Hemiptera: Coccoidea: Pseudococcidae)

Mealybugs have a haplodiploid reproduction system, with paternal genome elimination (PGE); the males are diploid soon after fertilization, but during embryogenesis, the male paternal set of chromosomes becomes heterochromatic (HC) and therefore inactive. Previous studies have suggested that paternal genes can be passed on from mealybug males to their sons, but not necessarily by any son, to the next generation. We employed crosses between two mealybug species—Planococcus ficus (Signoret) and Planococcus citri (Risso)—and between two populations of P. ficus, which differ in their mode of pheromone attraction, in order to demonstrate paternal inheritance from males to F2 through F1 male hybrids. Two traits were monitored through three generations: mode of male pheromone attraction (pherotype) and sequences of the internal transcribed spacer 2 (ITS2) gene segment (genotype). Our results demonstrate that paternal inheritance in mealybugs can occur from males to their F2 offspring, through F1 males (paternal line). F2 backcrossed hybrid males expressed paternal pherotypes and ITS2 genotypes although their mother originated through a maternal population. Further results revealed other, hitherto unknown, aspects of inheritance in mealybugs, such as that hybridization between the two species caused absence of paternal traits in F2 hybrid females produced by F1 hybrid females. Furthermore, hybridization between the two species raised the question of whether unattracted males have any role in the interactions between P. ficus and P. citri.