A tree and climate assessment tool for modelling ecosystem response to climate change

Understanding how vulnerable forest ecosystems are to climate change is a key requirement if sustainable forest management is to be achieved. Modelling the response of species in their regeneration niche to phenological and biophysical processes that are directly influenced by climate is one method for achieving this understanding. A model was developed to investigate species resilience and vulnerability to climate change within its fundamental-regeneration niche. The utility of the developed model, tree and climate assessment (TACA), was tested within the interior Douglas-fir ecosystem in south-central British Columbia. TACA modelled the current potential tree species composition of the ecosystem with high accuracy and modelled significant responses amongst tree species to climate change. The response of individual species suggests that the studied ecosystem could transition to a new ecosystem over the next 100 years. TACA showed that it can be an effective tool for identifying species resilience and vulnerability to changes in climate within the most sensitive stage of development, the regeneration phase. The TACA model was able to identify the degree of change in phenological and biophysical variables that control tree establishment, growth and persistence. The response to changes in one or more of these variables resulted in changes in the climatic suitability of the ecosystem for species and enabled a measure of vulnerability to be quantified. TACA could be useful to forest managers as a decision support tool for adaptation actions and by researchers interested in modelling stand dynamics under climate change.     

Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation

Customary medicinal plant species used by Australian Aborigines are disappearing rapidly with its associated knowledge, due to the loss of habitats. Conservation and protection of these species is important as they represent sources of novel therapeutic phytochemical compounds and are culturally valuable. Information on the spatial distribution and use of customary medicinal plants is often inadequate and fragmented, posing limitations on the identification and conservation of species-rich areas and culturally valuable habitats.In this study, the habitat suitability modeling program, MaxEnt, was used to predict the potential ecological niches of 431 customary medicinal plant species, based on bioclimatic variables. Specimen locality records were obtained from the Global Biodiversity Information Facility (GBIF) data portal and from Australia's Virtual Herbarium (AVH).Ecological niche models of 414 predicted species, which had 30 or more occurrence points, were used to produce maps indicating areas that were ecologically suitable for multiple species (concordance of high predicted ecological suitability) and having cultural values. For the concordance map, individual species niche models were thresholded and summed. To derive a map of culturally valuable areas, customary medicinal uses from Customary Medicinal Knowledgebase (CMKb) (www.biolinfo.org/cmkb) were used to weight individual species models, resulting in a value within each grid cell reflecting its cultural worth.Even though the available information is scarce and fragmented, our approach provides an opportunity to infer areas predicted to be suitable for multiple species (i.e. concordance hotspots) and to estimate the cultural value of a particular geographical area. Our results also indicate that to conserve bio-cultural diversity, comprehensive information and active participation of Aboriginal communities is indispensable.     

Mapping eucalypt forest susceptible to dieback associated with bell miners (Manorina melanophys) using laser scanning, SPOT 5 and ancillary topographical data

Mapping the location and extent of forest at risk from damaging agents or processes assists forest managers in prioritizing their planning and operational mitigation activities. In Australia, Bell Miner Associated Dieback (BMAD) refers to a form of canopy decline observed in eucalypt crowns occupied by colonies of bell miners (Manorina melanophrys). High densities of bell miners are associated with decreased avian abundance and diversity and an increase in psyllid abundance on crown foliage. BMAD has recently been nominated as a key threatening process in New South Wales (NSW). Consequently, a modelling system for predicting bell miner distribution in coastal eucalypt forests of NSW has been developed. The presence or absence of bell miners was recorded in 130 plots located within a 12,800 ha catchment study area containing a range of eucalypt forest types. The modelling system was produced by integrating a machine learning software suite (WEKA), and the statistical software R within the geographic resources analysis support system (GRASS) geographical information system (GIS). The variable modelled was the binary variable: presence or absence of bell minors. Six modelling techniques (Logistic regression; generalised additive models; two tree-based ensemble classification algorithms, random forest and Adaboost and Neural Networks) were integrated with airborne laser scanning; SPOT 5 and topographic derived variables. Model evaluation and parameter selection were measured by three threshold dependent measures (sensitivity, specificity and kappa) and the threshold independent Receiver Operator Curve (ROC) analysis. The final presence and absence maps were obtained through maximisation of the kappa statistic and applied at a resolution of 10 m across the entire catchment study area. For this data set, the most accurate algorithm for predicting the distribution of bell miner colonies was random forest (kappa = 0.84; ROC area under curve = 0.97). Variables most commonly selected in the six models were the laser scanning metrics; coefficient of variation, skewness, and the 10th and 90th percentiles derived from the shape of the height frequency distribution which, in turn, is directly influenced by vertical structure of the forest. An image textural statistic based on the shortwave infrared (SWIR) band of SPOT 5 was also commonly selected by the models. The SWIR band is sensitive to vegetation and soil moisture content. These models predicted that forest stands with a sparse eucalypt canopy over a moist, dense understorey were susceptible to being colonised by bell miners and hence BMAD.     

中型景观尺度下斑块类型和地理特征影响杨树人工林干部病害的发生——以河南省清丰县为例

景观病理学在开展病原扩散、病害发生及其严重程度方面以其全新的视角,为森林病害的区域控制提供了新的研究技术及理论支持。首次利用景观病理学原理和方法对河南省清丰县一个中型景观下杨树人工林干部病害发生特征开展了研究,目的是解析在大尺度下斑块类型和地理特征对杨树人工林病害发生的影响。在100 km2的调查区域,以种植方式和林分类型划分斑块类型,分析显示发病株率在不同斑块间差异显著：农田间作斑块的林木发病株率显著低于孤立斑块、纯林斑块、混交林等斑块的发病株率;但发病株率在孤立斑块、纯林斑块及混交林等斑块间无显著差异。抚育管理措施对预防和减轻杨树人工林干部病害的发生起到关键左右：精细管理林分（有修枝、施肥和锄草）的林木发病株率（p=0.001）和发病指数（p〈0.001）均显著低于粗放管理林分（无修枝、无施肥和锄草等）。人类活动,如无序修剪和放牧很可能是造成村落附近林分发病率显著高于其他地点林分的主要原因。采用logistic回归,以品种编号、树龄、树高、林分密度、林分郁闭度、林分类型、斑块类型、地理特征,等为自变量建立病害发生预测模型。方程拟合达到极显著水平（Wald=71.248,p〈0.001）。方程总的预测正确率为68.2%,发病的预测正确率为79.8%。     

Defining patch mosaic functional types to predict invasion patterns in a forest landscape.

Alien plant invasions contribute significantly to global changes by often affecting biodiversity and ecosystem processes. Operational methods for identifying landscape attributes that promote or constrain plant invasions are urgently needed to predict their future spread and manage them efficiently. We combined landscape and functional ecology concepts to define patch mosaic functional types (PMFTs) as groups of cells showing the same response to a plant invasion in a heterogeneous forest landscape. The invasion of a European temperate forest by the American black cherry (Prunus serotina) has been chosen as a case study. A set of variables was collected, mapped using a Geographic Information System, and analyzed with multivariate analyses to correlate landscape traits with Prunus serotina abundance in each cell of a grid overlaid on the forest. A risk index was derived and mapped for three invasion levels: seedling colonization, tree establishment, and ecosystem invasion. Five PMFTs were identified and characterized by a set of traits related to soil properties, land use, disturbance, and invasion history. Scots pine plantations on podzols were the most invasible, while cells dominated by hydromorphic or calcareous soils were the most resistant. Most colonized patch mosaics provided suitable conditions for future establishment and invasion. Being strongly spatially connected, suitable patches provide corridors for Prunus serotina to colonize new parts of the forest. Conversely, the most resistant PMFTs were spatially agglomerated in the south of the forest and could act as a barrier. Colonization, establishment, and invasion risk maps were finally obtained by combining partial risks associated with each landscape trait at the cell scale. Within a heterogeneous landscape, we defined and organized PMFTs into a hierarchy, according to their associated risk for colonization, establishment, or invasion by a given invasive species. Each hierarchical level should be associated with a management strategy aiming at reducing one or more partial risk. Monitoring safe areas, extending cutting rotations, harvesting recently colonized stands tree by tree, promoting a multilayered understory vegetation, cutting down reproducing alien trees, favoring shade-tolerant, fast-growing, native tree species, removing alien trees at the leading edge, and proposing soil enrichment or irrigation in heavily invaded areas are recommended.     

外来有害生物风险评估技术

概述了有害生物风险分析的概念、必要性、生物学基础和一般程序 ;论述了生态气候图、农业气候相似距库、生态气候评价的分析模型、地理信息系统、专家系统、基于定性分析与定量估算相结合的数学模型等有害生物风险分析技术的原理和特点 ;认为应用网络技术 ,建立基于分布式计算的全球入侵物种风险评价数据体系 ,可有效提高风险评价的速度和准确性。     

Effects of Oil‐Palm Plantations on Diversity of Tropical Anurans

Agriculturally altered vegetation, especially oil‐palm plantations, is rapidly increasing in Southeast Asia. Low species diversity is associated with this commodity, but data on anuran diversity in oil‐palm plantations are lacking. We investigated how anuran biological diversity differs between forest and oil‐palm plantation, and whether observed differences in biological diversity of these areas is linked to specific environmental factors. We hypothesized that biological diversity is lower in plantations and that plantations support a larger proportion of disturbance‐tolerant species than forest. We compared species richness, abundance, and community composition between plantation and forest areas and between site types within plantation and forest (forest stream vs. plantation stream, forest riparian vs. plantation riparian, forest terrestrial vs. plantation terrestrial). Not all measures of biological diversity differed between oil‐palm plantations and secondary forest sites. Anuran community composition, however, differed greatly between forest and plantation, and communities of anurans in plantations contained species that prosper in disturbed areas. Although plantations supported large numbers of breeding anurans, we concluded the community consisted of common species that were of little conservation concern (commonly found species include Fejervarya limnocharis, Microhyla heymonsi, and Hylarana erythrea). We believe that with a number of management interventions, oil‐palm plantations can provide habitat for species that dwell in secondary forests. Efectos de las Plantaciones de Palma de Aceite sobre la Diversidad de Anuros Tropicales Faruk et al.     

The distribution of lianas and their change in abundance in temperate forests over the past 45 years

Lianas (woody vines) are an important and dynamic component of many forests throughout the world, and increases in CO2, mean winter temperature, and forest fragmentation may promote their growth and proliferation in temperate forests. In this study, we used a 45-year data set to test the hypothesis that lianas have increased in abundance and basal area in the interiors of 14 deciduous temperate forests in Wisconsin (USA) since 1959. We also censused woody plants along a gradient from the forest edge to the interior in seven of these forests to test the hypothesis that the abundance of lianas declines significantly with increasing distance from the forest edge. We found that lianas did not increase in abundance within the interiors of temperate forests in Wisconsin over the last 45 years. However, relative and absolute liana abundance decreased sharply with increasing distance from forest edges. Our findings suggest that forest fragmentation, not climate change, may be increasing the abundance of lianas in northern deciduous temperate forests, and that lianas may further increase in abundance if the severity of forest fragmentation intensifies.     

Frog, Bat, and Dung Beetle Diversity in the Cloud Forest and Coffee Agroecosystems of Veracruz, Mexico

Abstract:  We compared the species diversity of copronecrophagous beetles (Scarabaeinae) , bats, and frogs in tropical montane cloud forest (original vegetation) and shaded coffee plantations (an agroecosystem common to the region) for a landscape in central Veracruz, Mexico. We sampled in three tropical montane cloud forest fragments and in three coffee plantations with traditional polyculture shade between 1998 and 2001. The three indicator groups responded differently to the transformation of tropical montane cloud forest into shaded coffee plantations. The species richness of frogs was one-fifth less in coffee plantations than in forest fragments, and only one-third of the frog species occurred in both forest fragments and coffee plantations. The number of beetle species and their abundance was significantly greater in coffee plantations than in the forest fragments, whereas species richness and species composition of bats were virtually the same in both habitats. The majority of the abundant species remained as such in both communities, but species that were less abundant were not scarce in both habitats. We attributed differences in the species assemblages to the differing degrees of penetrability of the borders of the two habitat types (especially for the coffee plantations) and to the differences in life-history traits among species. Shaded coffee plantations form a matrix that envelops the remaining fragments of cloud forest. Together they connect the forest fragments with the other habitats of the landscape and represent a highly functional resource for the preservation of biodiversity that serves as a complement to but not a substitute for cloud forest in this notably modified landscape.     

Modelling the distribution and ecology of <Emphasis Type="Italic">Trichosolen</Emphasis> blooms on coral reefs worldwide

Worldwide blooms of the green alga Trichosolen have been reported on damaged coral reefs following catastrophic events. However, the global distribution of Trichosolen and the factors triggering such blooms remained elusive because of a paucity of occurrence records. This study presents a presence-only niche modelling approach to map the potential distribution and delineate bloom risk areas as well as to identify environmental response optima for non-blooming occurrences and blooms. The modelled suitability map revealed a pantropical to subtropical distribution, while high suitability values delineated bloom risk areas including important tropical reef systems where Trichosolen has not yet been reported from. While both blooms and non-bloom occurrences show a strong preference for high temperatures, blooms responded better to broader nutrient ranges than non-blooms, suggesting the importance of sudden nutrient inputs during catastrophic events in the formation of blooms.     

几种不同更新的森林群落碳储量结构特征分析

森林更新是维持和扩大森林资源的主要途径,也是森林结构调整、森林可持续经营和构建多功能高效的森林生态系统的过程。在安徽南部的岭南林场,选择了马尾松（Pinus massoniana Lamb）人工林（MP）、杉木（Cunninghamia lanceolata）人工林（CF）、阔叶混交天然次生林（MB）和针阔混交人工次生林（MN）等4种具有典型代表性的森林群落类型,研究了不同更新方式形成的森林群落的碳储量结构特征。结果表明：（1）针阔混交次生林树干生物量密度最大,为（67.32±56.57）mg.hm-2,杉木人工林生物量密度最小,为（43.79±9.13）mg.hm-2,而马尾松树干生物量所占比例最大,为（64.04±1.49）%。阔叶混交次生林碳储量最高,为（126.47±90.75）mg.hm-2;（2）4种群落类型中,阔叶混交林与马尾松群落碳密度最大,分别为95.67和98.21mg.hm-2,杉木群落碳密度最小,为55.41 mg.hm-2。阔叶混交林中的灌木层生物量碳密度最大,为（17.438±24.627）mg hm-2,马尾松林的草本层和枯落层生物量碳密度最高,分别为（1.326±0.431）、（5.517±2.846）mg.hm-2;（3）阔叶混交林群落的地下碳储量最高,为（10.5±9.8）mg.hm-2,群落地下碳储量从大到小的顺序是阔叶混交林〉针阔混交林〉杉木林〉马尾松林。相应的群落地上碳储量从大到小的顺序是阔叶混交林〉针阔混交林〉马尾松林〉杉木林。杉木林根茎比（R/S）最大,为0.21±0.01,杉木林群落中的灌木层根茎比（R/S）最大,为1.61±0.11;（4）在阔叶混交林中,株数密度与乔木层、草本层的碳比例正相关。在杉木林群落中,平均胸径、株数密度与乔木层碳所占比例成负相关。除杉木林群落外,灌木层碳含量之比与胸径及密度等调查因子都呈负相关。     

重庆四面山五种人工林土壤有机碳储量研究

对重庆四面山杉木纯林、杉木×马尾松、杉木×马尾松×木荷、木荷×石栎×枫香×香樟、木荷×石栎人工林进行了有机碳储量研究。运用网格取样法取样,每个样地各层各取样81个,共计取样810个。结果表明：（1）林分类型不同,A层土壤有机碳含量总体差异显著（p〈0.05）。在此五种林分类型中,土壤平均有机碳含量以杉木人工纯林为最高,石栎木荷枫香香樟人工混交林为最小;B层土壤有机碳含量总体差异不显著（p〉0.05）。在垂直剖面上,五种人工林均差异显著（p〈0.05）,且表现出随着土层深度的增加,林下土壤有机碳含量随之减小,体现出土壤有机碳含量的表聚作用。（2）有机碳储量规律基本与土壤有机碳含量规律一致。在垂直剖面上,此五种人工林有机碳储量均差异显著（p〈0.05）,表现出随着土层深度的增加而减小的规律。不同林种类型、同一土层深度或是不同土层深度、同一林种类型其有机碳储量变异系数大小均不一样,这说明此五种林地土壤普遍存在空间异质性且其异质程度不一样。（3）就 A 土层而言,本研究区五种人工林平均有机碳密度为5.34 kg·m^-2,比相关研究的重庆市土壤有机碳密度3.11 kg·m^-2,全国森林土壤有机碳密度4.24 kg·m^-2,全国土壤有机碳密度2.67kg·m^-2等分别多出71.70%,25.94%,100%。     

Need for a global map of forest naturalness for a sustainable future

There is a growing need to assess and monitor forest cover and its conservation status over global scales to determine human impact on ecosystems and to develop sustainability plans. Recent approaches to measure regional and global forest status and dynamics are based on remotely sensed estimates of tree cover. We argue that tree cover should not be used to assess the area of forest ecosystems because tree cover is an undefined subset of forest cover. For example, tree cover can indicate a positive trend even in the presence of deforestation, as in the case of plantations. We believe a global map of forest naturalness that accounts for the bio-ecological integrity of forest ecosystems, for example, intact forests, old-growth forest patches, rewilding forests (exploited forest landscapes undergoing long-term natural succession), and managed forests is needed for global forest assessment.     

Managing Boreal Forest Landscapes for Flying Squirrels

Abstract: Flying squirrel (Pteromys volans) populations have declined severely during the past few decades, and the species has become a focal species in forest management and the conservation debate in Finland. We compared landscape structure around known flying squirrel home ranges with randomly chosen forest sites to determine which landscape patterns characterize the areas occupied by the species in northern Finland. We sought to identify the key characteristics of the landscape that support the remaining flying squirrel populations. We analyzed landscape structure within circular areas with 1- and 3-km radii around 63 forest sites occupied by flying squirrels, and around 96 random sites. We applied stepwise analysis of the landscape structure where landscapes were built up step-by-step by adding patch types in order of their suitability for the flying squirrel. The land-use and forest-resource data for the analysis were derived from multisource national forest inventory and imported to a geographical information system. Landscape patch types were divided into three suitability categories: breeding habitat (mixed spruce-deciduous forests); dispersal habitat ( pine and young forests); and unsuitable habitat ( young sapling stands, open habitats, water). Flying squirrel landscapes contained more suitable breeding habitat patches and were better connected by dispersal habitats than random landscapes. Our results suggest that for the persistence of the flying squirrel, forest managers should 1) maintain a deciduous mixture, particularly in spruce-dominated forests; 2) maintain physical connectivity between optimal breeding habitats; and 3) impose coarse-grained structures on northeastern Finnish landscapes at current levels of habitat availability.     

A process-based model of nitrogen cycling in forest plantations: Part II. Simulating growth and nitrogen mineralisation of Eucalyptus globulus plantations in south-western Australia

We applied a new version of the G’DAY ecosystem model to short-rotation plantations of Eucalyptus globulus growing under a Mediterranean climate in south-western Australia. The new version, that includes modified submodels for biomass production, water balance, litter and soil organic matter (SOM) decomposition, and soil inorganic N balance, was parameterised and applied to three experimental eucalypt sites (Mumballup, Darkan and Northcliffe) of contrasting productivity. With a common base set of parameter values, the model was able to correctly reproduce observed time series of soil water content, canopy leaf area index and stemwood data at the three sites. The model's ability to simulate soil N supply under forest plantations was tested by simulating N mineralisation at each of the three sites over the duration of the experiment (10 years). Simulated annual net N mineralisation in the litter and top 20 cm soil layer ranged from 50 to 170 kg N ha⁻¹ across the sites as a result of differences in rates of litter production, SOM and litter decomposition, and microbial N immobilisation and (re-)mineralisation. Simulations of annual soil N mineralisation were similar to measured rates over a 3-year period, except for an overestimation in 1 year at Mumballup and 2 years at Darkan. Model results indicated the importance of fine root production and turnover for N supply. As plantations age, supply of N to trees increasingly originates from litter decomposition, while the contribution from decomposition of SOM decreases. Although major soil feedbacks associated with litter production, decomposition and N availability are adequately integrated into G’DAY, further work is required in some aspects of the model, including the utility of the C-allocation submodel over a wide range of site conditions and silvicultural treatments.     

Evidence of Local Adaptation in the Demographic Response of American Ginseng to Interannual Temperature Variation

Abstract: Bioclimatic envelope models of species’ responses to climate change are used to predict how species will respond to increasing temperatures. These models are frequently based on the assumption that the northern and southern boundaries of a species’ range define its thermal niche. However, this assumption may be violated if populations are adapted to local temperature regimes and have evolved population‐specific thermal optima. Considering the prevalence of local adaptation, the assumption of a species‐wide thermal optimum may be violated for many species. We used spatially and temporally extensive demographic data for American ginseng (Panax quinquefolius L.) to examine range‐wide variation in response of population growth rate (λ) to climatic factors. Our results suggest adaptation to local temperature, but not precipitation. For each population, λ was maximized when annual temperatures were similar to site‐specific, long‐term mean temperatures. Populations from disparate climatic zones responded differently to temperature variation, and there was a linear relation between population‐level thermal optima and the 30‐year mean temperature at each site. For species that are locally adapted to temperature, bioclimatic envelope models may underestimate the extent to which increasing temperatures will decrease population growth rate. Because any directional change from long‐term mean temperatures will decrease population growth rates, all populations throughout a species’ range will be adversely affected by temperature increase, not just populations at southern and low‐elevation boundaries. Additionally, when a species’ local thermal niche is narrower than its range‐wide thermal niche, a smaller temperature increase than would be predicted by bioclimatic envelope approaches may be sufficient to decrease population growth.     

Biofuel Plantations on Forested Lands: Double Jeopardy for Biodiversity and Climate

Abstract: The growing demand for biofuels is promoting the expansion of a number of agricultural commodities, including oil palm (Elaeis guineensis). Oil‐palm plantations cover over 13 million ha, primarily in Southeast Asia, where they have directly or indirectly replaced tropical rainforest. We explored the impact of the spread of oil‐palm plantations on greenhouse gas emission and biodiversity. We assessed changes in carbon stocks with changing land use and compared this with the amount of fossil‐fuel carbon emission avoided through its replacement by biofuel carbon. We estimated it would take between 75 and 93 years for the carbon emissions saved through use of biofuel to compensate for the carbon lost through forest conversion, depending on how the forest was cleared. If the original habitat was peatland, carbon balance would take more than 600 years. Conversely, planting oil palms on degraded grassland would lead to a net removal of carbon within 10 years. These estimates have associated uncertainty, but their magnitude and relative proportions seem credible. We carried out a meta‐analysis of published faunal studies that compared forest with oil palm. We found that plantations supported species‐poor communities containing few forest species. Because no published data on flora were available, we present results from our sampling of plants in oil palm and forest plots in Indonesia. Although the species richness of pteridophytes was higher in plantations, they held few forest species. Trees, lianas, epiphytic orchids, and indigenous palms were wholly absent from oil‐palm plantations. The majority of individual plants and animals in oil‐palm plantations belonged to a small number of generalist species of low conservation concern. As countries strive to meet obligations to reduce carbon emissions under one international agreement (Kyoto Protocol), they may not only fail to meet their obligations under another (Convention on Biological Diversity) but may actually hasten global climate change. Reducing deforestation is likely to represent a more effective climate‐change mitigation strategy than converting forest for biofuel production, and it may help nations meet their international commitments to reduce biodiversity loss.     

Assessment of forest fire vulnerability zones in Missouri,United States of America

Forest fire is one of the major disasters that distresses the terrestrial environment and causes economic disruptions for people and communities in areas prone to forest fire. Information on forest fire risk zones is therefore essential for effective and sound decision-making in forest management. Forest fire risk assessment is a critical part and the most important step in forest management because it enables us to know where the risk is higher in order to minimize threats to life, property and natural resources. This study used a hazard assessment model to assess forest fire risk in Missouri based on several measurable environmental parameters influencing forest fire risk vulnerability. Using the four ecological zones in Missouri as the basis of analysis, three forest risk zones were identified. These were high forest fire risk zones, moderate forest fire risk zone and low forest fire risk zone. Strategies for the mitigation of the hazard of forest fire in the state were also recommended.     

Using forest inventory data to assess fisher resting habitat suitability in California.

The fisher (Martes pennanti) is a forest-dwelling carnivore whose current distribution and association with late-seral forest conditions make it vulnerable to stand-altering human activities or natural disturbances. Fishers select a variety of structures for daily resting bouts. These habitat elements, together with foraging and reproductive (denning) habitat, constitute the habitat requirements of fishers. We develop a model capable of predicting the suitability of fisher resting habitat using standard forest vegetation inventory data. The inventory data were derived from Forest Inventory and Analysis (FIA), a nationwide probability-based sample used to estimate forest characteristics. We developed the model by comparing vegetation and topographic data at 75 randomly selected fisher resting structures in the southern Sierra Nevada with 232 forest inventory plots. We collected vegetation data at fisher resting locations using the FIA vegetation sampling protocol and centering the 1-ha FIA plot on the resting structure. To distinguish used and available inventory plots, we used nonparametric logistic regression to evaluate a set of a priori biological models. The top model represented a dominant portion of the Akaike weights (0.87), explained 31.5% of the deviance, and included the following variables: average canopy closure, basal area of trees <51 cm diameter breast height (dbh), average hardwood dbh, maximum tree dbh, percentage slope, and the dbh of the largest conifer snag. Our use of routinely collected forest inventory data allows the assessment and monitoring of change in fisher resting habitat suitability over large regions with no additional sampling effort. Although models were constrained to include only variables available from the list of those measured using the FIA protocol, we did not find this to be a shortcoming. The model makes it possible to compare average resting habitat suitability values before and after forest management treatments, among administrative units, across regions and over time. Considering hundreds of plot estimates as a sample of habitat conditions over large spatial scales can bring a broad perspective, at high resolution, and efficiency to the assessment and monitoring of wildlife habitat.     

Effects of landscape transformation on bird colonization and extinction patterns in a large‐scale,long‐term natural experiment

Conversion of agricultural land to forest plantations is a major driver of global change. Studies on the impact of forest plantations on biodiversity in plantations and in the surrounding native vegetation have been inconclusive. Consequently, it is not known how to best manage the extensive areas of the planet currently covered by plantations. We used a novel, long‐term (16 years) and large‐scale (30,000 ha) landscape transformation natural experiment (the Nanangroe experiment, Australia) to test the effects of land conversion on population dynamics of 64 bird species associated with woodland and forest. A unique aspect of our study is that we focused on the effects of plantations on birds in habitat patches within plantations. Our study design included 56 treatment sites (Eucalyptus patches where the surrounding matrix was converted from grazed land to pine plantations), 55 control sites (Eucalyptus patches surrounded by grazed land), and 20 matrix sites (sites within the pine plantations and grazed land). Bird populations were studied through point counts, and colonization and extinction patterns were inferred through multiple season occupancy models. Large‐scale pine plantation establishment affected the colonization or extinction patterns of 89% of studied species and thus led to a comprehensive turnover in bird communities inhabiting Eucalyptus patches embedded within the maturing plantations. Smaller bodied species appeared to respond positively to plantations (i.e., colonization increased and extirpation of these species decreased in patches surrounded by plantations) because they were able to use the newly created surrounding matrix. We found that the effects of forest plantations affected the majority of the bird community, and we believe these effects could lead to the artificial selection of one group of species at the expense of another.