Modelling habitat overlap among sympatric mesocarnivores in southern Illinois,USA

Few researchers have developed large-scale habitat models for sympatric carnivore species. We created habitat models for red foxes (Vulpes vulpes), coyotes (Canis latrans) and bobcats (Lynx rufus) in southern Illinois, USA, using the Penrose distance statistic, remotely sensed landscape data, and sighting location data within a GIS. Our objectives were to quantify and spatially model potential habitat differences among species. Habitat variables were quantified for 1-km² buffered areas around mesocarnivore sighting locations. Following variable reduction procedures, five habitat variables (percentage of grassland patches, interspersion–juxtaposition of forest patches, mean fractal dimension of wetland patches and the landscape, and road density) were used for analysis. Only one variable differed (P < 0.05) between red fox and coyote sighting areas (road density) and bobcat and coyote sighting areas (mean fractal dimension of the landscape). However, all five variables differed between red fox and bobcat sighting areas, indicating considerable differences in habitat affiliation between this pair-group. Compared to bobcats, red fox sightings were affiliated with more grassland cover and larger grassland patches, higher road densities, lower interspersion and juxtaposition of forest patches, and lower mean fractal dimension of wetland patches. These differences can be explained by different life history requirements relative to specific cover types. We then used the Penrose distance statistic to create habitat models for red foxes and bobcats, respectively, based on the five-variable dataset. An independent set of sighting locations were used to validate these models; model fit was good with 65% of mesocarnivore locations within the top 50% of Penrose distance values. In general, red foxes were affiliated with mixtures of agricultural and grassland cover, whereas bobcats were associated with a combination of grassland, wetland, and forest cover. The greatest habitat overlap between red foxes and bobcats was found at the interface between forested areas and more open cover types. Our study provides insight into habitat overlap among sympatric mesocarnivores, and the distance-based modelling approach we used has numerous applications for modelling wildlife–habitat relationships over large scales.     

Estimating the extinction date of the thylacine with mixed certainty data

The thylacine (Thylacinus cynocephalus), one of Australia's most characteristic megafauna, was the largest marsupial carnivore until hunting, and potentially disease, drove it to extinction in 1936. Although thylacines were restricted to Tasmania for 2 millennia prior to their extinction, recent so‐called plausible sightings on the Cape York Peninsula in northern Queensland have emerged, leading some to speculate the species may have persisted undetected. We compiled a data set that included physical evidence, expert‐validated sightings, and unconfirmed sightings up to the present day and implemented a range of extinction models (focusing on a Bayesian approach that incorporates all 3 types of data by modeling valid and invalid sightings as independent processes) to evaluate the likelihood of the thylacine's persistence. Although the last captive individual died in September 1936, our results suggested that the most likely extinction date would be 1940. Our other extinction models estimated the thylacine's extinction date between 1936 and 1943, and the most optimistic scenario indicated that the species did not persist beyond 1956. The search for the thylacine, much like similar efforts to rediscover other recently extinct charismatic taxa, is likely to be fruitless, especially given that persistence on Tasmania would have been no guarantee the species could reappear in regions that had been unoccupied for millennia. The search for the thylacine may become a rallying point for conservation and wildlife biology and could indirectly help fund and support critical research in understudied areas such as Cape York. However, our results suggest that attempts to rediscover the thylacine will be unsuccessful and that the continued survival of the thylacine is entirely implausible based on most current mathematical theories of extinction.     

Abundance of small cetaceans in waters of the central Spanish Mediterranean

Seasonal aerial surveys were conducted in the waters of the central Spanish Mediterranean from 2001 to 2003 using the line transect sampling methodology to estimate cetacean abundance. The density of the three most abundant species, striped dolphin (Stenella coeruleoalba), bottlenose dolphin (Tursiops truncatus) and Risso’s dolphins (Grampus griseus), was estimated. In the case of the first two species, the density was estimated accounting for the proportion of submerged animals, while for Risso’s dolphin only the surface density could be estimated. The striped dolphin was the most abundant species in the study area with a mean density of 0.489 dolphins km⁻² (95% CI = 0.339–0.705) and a mean abundance of 15,778 dolphins (95% CI = 10,940–22,756). This density is comparable to that obtained in the International Ligurian Sea Cetacean Sanctuary. Striped dolphins were observed throughout the whole year and no seasonal changes in the density were detected. The mean density of bottlenose dolphins was an order of magnitude lower than that of striped dolphins (0.041 dolphins km⁻²; 95% CI = 0.023–0.075) with a mean abundance of 1,333 dolphins (95% CI = 739–2,407). The Risso’s dolphin had a surface estimated density of 0.015 dolphins km⁻² (95% CI = 0.005–0.046) and a mean abundance of 493 dolphins (95% CI = 162–1,498). These results provide valuable biological information useful to develop conservation plans and establish a baseline for future population trend studies.     

Fission and its effect on population structure of Holothuria atra (Echinodermata: Holothuroidea) in Taiwan

Populations of Holothuria atra Jaeger occurring at Wanlitung and Nanwan were sampled monthly at spring tide from March 1990 to February 1992 in southern Taiwan. At Wanlitung, small individuals with evidence of fission and regeneration were abundant in shallow tidepools on the wide reef flats (density: 98±40 ( ± SD) 100 m^-2, body weight: 6 to 182 g). At Nanwan, large individuals with no evidence of fission were sparse in deep tidepools and narrow flats [density: 0.24±0.07 ( ± SD) 100 m^{- 2}, body weight: 351 to 1400 g]. At Wanlitung, fission occurred throughout the year with an average monthly fission frequency of 4.5%, peaking at 18% in September 1990 and 16% in August 1991. Fission was accomplished by revolving, twisting, and stretching of the body, resulting in two unequal fragments. The minimal weight of 3007 individuals measured during 1 yr at Wanlitung was 6 g. All ten individuals weighing 6 to 9 g ( ± SD = 6.7 ± 1.1) 100 m^{- 2} showed evidence of regeneration from fission products. Nine large individuals (>500 g) transferred from Nanwan to Wanlitung and 50 small individuals (<100 g) transferred from Wanlitung to Nanwan in February 1991 showed no evidence of fission during the following year. Fission occurs in small individuals living in shallow tidepools, suggesting that fission probably is triggered by a stressful environment resulting from solar radiation at the unusually low water level of spring tide. Fission of H. atra at Wanlitung results in a population consisting of small individuals.     

Identifying Sighting Clusters of Endangered Taxa with Historical Records

Abstract: The probability and time of extinction of taxa is often inferred from statistical analyses of historical records. Many of these analyses require the exclusion of multiple records within a unit of time (i.e., a month or a year). Nevertheless, spatially explicit, temporally aggregated data may be useful for identifying clusters of sightings (i.e., sighting clusters) in space and time. Identification of sighting clusters highlights changes in the historical recording of endangered taxa. I used two methods to identify sighting clusters in historical records: the Ederer–Myers–Mantel (EMM) test and the space–time permutation scan (STPS). I applied these methods to the spatially explicit sighting records of three species of orchids that are listed as endangered in the Republic of Ireland under the Wildlife Act (1976): Cephalanthera longifolia, Hammarbya paludosa, and Pseudorchis albida. Results with the EMM test were strongly affected by the choice of the time interval, and thus the number of temporal samples, used to examine the records. For example, sightings of P. albida clustered when the records were partitioned into 20‐year temporal samples, but not when they were partitioned into 22‐year temporal samples. Because the statistical power of EMM was low, it will not be useful when data are sparse. Nevertheless, the STPS identified regions that contained sighting clusters because it uses a flexible scanning window (defined by cylinders of varying size that move over the study area and evaluate the likelihood of clustering) to detect them, and it identified regions with high and regions with low rates of orchid sightings. The STPS analyses can be used to detect sighting clusters of endangered species that may be related to regions of extirpation and may assist in the categorization of threat status.     

Spatio-temporal patterns of juvenile marine turtle occurrence in waters of the European continental shelf

We present data spanning approximately 100 years regarding the spatial and temporal occurrence of marine turtle sightings and strandings in the northeast Atlantic from two public recording schemes and demonstrate potential signals of changing population status. Records of loggerhead (n = 317) and Kemp’s ridley (n = 44) turtles occurring on the European continental shelf were most prevalent during the autumn and winter, when waters were coolest. In contrast, endothermic leatherback turtles (n = 1,668) were most common during the summer. Analysis of the spatial distribution of hard-shell marine turtle sightings and strandings highlights a pattern of decreasing records with increasing latitude. The spatial distribution of sighting and stranding records indicates that arrival in waters of the European continental shelf is most likely driven by North Atlantic current systems. Future patterns of spatial-temporal distribution, gathered from the periphery of juvenile marine turtles habitat range, may allow for a broader assessment of the future impacts of global climate change on species range and population size.     

Estimating abundance of killer whales in the nearshore waters of the Gulf of Alaska and Aleutian Islands using line-transect sampling

Killer whale (Orcinus orca Linnaeus, 1758) abundance in the North Pacific is known only for a few populations for which extensive longitudinal data are available, with little quantitative data from more remote regions. Line-transect ship surveys were conducted in July and August of 2001–2003 in coastal waters of the western Gulf of Alaska and the Aleutian Islands. Conventional and Multiple Covariate Distance Sampling methods were used to estimate the abundance of different killer whale ecotypes, which were distinguished based upon morphological and genetic data. Abundance was calculated separately for two data sets that differed in the method by which killer whale group size data were obtained. Initial group size (IGS) data corresponded to estimates of group size at the time of first sighting, and post-encounter group size (PEGS) corresponded to estimates made after closely approaching sighted groups. ‘Resident’-type (fish-eating) killer whales were more abundant than the ‘transient’-type (mammal-eating). Abundance estimates of resident killer whales (991 [95% CI = 379–2,585] [IGS] and 1,587 [95% CI = 608–4,140] [PEGS]), were at least four times greater than those of the transient killer whales (200 [95% CI = 81–488] [IGS] and 251 [95% CI = 97–644] whales [PEGS]). The IGS estimate of abundance is preferred for resident killer whales because the estimate based on PEGS data may show an upward bias. The PEGS estimate of abundance is likely more accurate for transients. Residents were most abundant near Kodiak Island in the northern Gulf of Alaska, around Umnak and Unalaska Islands in the eastern Aleutians, and in Seguam Pass in the central Aleutians. This ecotype was not observed between 156 and 164°W, south of the Alaska Peninsula. In contrast, transient killer whale sightings were found at higher densities south of the Alaska Peninsula between the Shumagin Islands and the eastern Aleutians. Only two sightings of ‘offshore’-type killer whales were recorded during the surveys, one northeast of Unalaska Island and the other south of Kodiak Island. These are the first estimates of abundance of killer whale ecotypes in the Aleutian Islands and Alaska Peninsula area and provide a baseline for quantifying the role of these top predators in their ecosystem. Electronic Supplementary Material  Supplementary material is available in the online version of this article at and is accessible for authorized users.

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Using land-use history and multiple baselines to determine bird responses to cocoa agroforestry

Agroforests can play an important role in biodiversity conservation in complex landscapes. A key factor distinguishing among agroforests is land-use history – whether agroforests are established inside forests or on historically forested but currently open lands. The disparity between land-use histories means the appropriate biodiversity baselines may differ, which should be accounted for when assessing the conservation value of agroforests. Specifically, comparisons between multiple baselines in forest and open land could enrich understanding of species’ responses by contextualizing them. We made such comparisons based on data from a recently published meta-analysis of the effects of cocoa (Theobroma cacao) agroforestry on bird diversity. We regrouped rustic, mixed shade cocoa, and low shade cocoa agroforests, based on land-use history, into forest-derived and open-land-derived agroforests and compared bird species diversity (species richness, abundance, and Shannon's index values) between forest and open land, which represented the 2 alternative baselines. Bird diversity was similar in forest-derived agroforests and forests (Hedges’ g* estimate [SE] = -0.3144 [0.3416], p = 0.36). Open-land-derived agroforests were significantly less diverse than forests (g* = 1.4312 [0.6308], p = 0.023) and comparable to open lands (g* = -0.1529 [0.5035], p = 0.76). Our results highlight how land-use history determined the conservation value of cocoa agroforests. Forest-derived cocoa agroforests were comparable to the available – usually already degraded – forest baselines, but entail future degradation risks. In contrast, open-land-derived cocoa agroforestry may offer restoration opportunities. Our results showed that comparisons among multiple baselines may inform relative contributions of agroforestry systems to bird conservation on a landscape scale.     

Relating bird host distribution and spatial heterogeneity in trematode infections in an intertidal snail—from small to large scale

Shorebird abundance and spatial distribution of larval trematodes in the New Zealand mudsnail, Zeacumantus subcarinatus, were investigated in soft-sediment intertidal bays within Otago Harbour, South Island, New Zealand. In a small-scale study, recruitment of trematodes to caged sentinel snails and the prevalence of infection in free-living snails were examined across a grid of fifteen 50×25 m plots arranged in a representative area of an intertidal bay, in relation to within-plot shorebird abundance (definitive hosts) and tidal height. In a large-scale study, natural spatial variation of larval trematodes in Z. subcarinatus was examined across 12 bays in relation to local abundance of shorebirds. Our results revealed that trematode prevalence in snails was positively correlated with bird abundance across bays (R ²=0.503, P=0.006). In contrast, despite a difference in bird abundance between tidal heights, there was no evidence that trematode prevalence reflected the spatial distribution of birds in the small-scale study, suggesting that factors related to differences in submersion time may override the differential input of trematode eggs from birds.     

Socio-economic predictors of domestic wood use in an Atlantic forest area (north-east Brazil): a tool for directing conservation efforts

Given the excessive use pressure on forests, characterisation of the major users of forest resources can help guide conservation efforts. This study examines whether socio-economic variables explain domestic wood use in an area of Atlantic forest in the community of Três Ladeiras (Pernambuco, north-east Brazil). Socio-economic data were collected from 62 households, and geometric measurements of wood products in each household were taken to calculate the wood volume. An informant in each household indicated the average replacement time for each type of wood use. Data were analysed for static volume (wood volume found at the time of the visit) and dynamic volume (rate of wood consumption, calculated as the ratio between volume and replacement time). Multiple regression analyses were performed to determine the relationships between wood volume (static and dynamic) and the number of species used; independent variables including monthly family income, number of residents, average age of heads of the household, age of oldest household member, average residence time of heads of the household, average education level of heads of the household and education level of the most educated household member. Monthly income was inversely related to the static wood volume (adjusted R ² = 17.6%, p < 0.001), rate of wood consumption (adjusted R ² = 23.0%, p < 0.001) and number of species used (adjusted R ² = 22.3%, p < 0.001) and was the most important predictive variable for these three outcomes. Other factors such as average education level and average age of heads of the household were also explanatory variables of the total rate of wood consumption, as these two variables, together with monthly family income, explain 31.3% of the total dynamic volume. Given the high importance of income in our study, we suggest that future conservation strategies give special attention to the poorest members of the community.     

Strength of evidence for density dependence in abundance time series of 1198 species

Population limitation is a fundamental tenet of ecology, but the relative roles of exogenous and endogenous mechanisms remain unquantified for most species. Here we used multi-model inference (MMI), a form of model averaging, based on information theory (Akaike's Information Criterion) to evaluate the relative strength of evidence for density-dependent and density-independent population dynamical models in long-term abundance time series of 1198 species. We also compared the MMI results to more classic methods for detecting density dependence: Neyman-Pearson hypothesis-testing and best-model selection using the Bayesian Information Criterion or cross-validation. Using MMI on our large database, we show that density dependence is a pervasive feature of population dynamics (median MMI support for density dependence = 74.7-92.2%), and that this holds across widely different taxa. The weight of evidence for density dependence varied among species but increased consistently, with the number of generations monitored. Best-model selection methods yielded similar results to MMI (a density-dependent model was favored in 66.2-93.9% of species time series), while the hypothesis-testing methods detected density dependence less frequently (32.6-49.8%). There were no obvious differences in the prevalence of density dependence across major taxonomic groups under any of the statistical methods used. These results underscore the value of using multiple modes of analysis to quantify the relative empirical support for a set of working hypotheses that encompass a range of realistic population dynamical behaviors.     

The ecology of the molluscs of Thalassia communities,Jamaica, West Indies. II. Molluscan population variability along an environmental stress gradient

Along a composite onshore-offshore gradient, 4 homogeneous areas within beds of the marine angiosperm Thalassia were studied in detail. Eleven environmental variables, and molluscan and echinoderm abundance were sampled at monthly intervals for 1 year. Environmental conditions were generally more extreme, and their variance greatest, nearshore; they decreased significantly with distance from shore. Environmental predictability and cumulative diversity (H) increased with distance from shore, whereas abundance was greatest in the higher-stress environments. Over the year, the population variance (number of species, density, and diversity) was no greater in the unpredictable, low diversity environments than in the more predictable, high-diversity environments. Bivalves collected from the low-diversity environments were markedly eurytopic forms. whereas the highest-diversity area contained predominantly stenotopic taxa. Typical suspension feeders were dominant only in the most diverse area, whereas more generalized feeders dominated the higher-stress environments. There was no correlation between bivalve diversity increased with the variety of available food. Evidence suggests that catastrophes and other long-term phenomena, and biological factors such as predation, are of great importance in determining the differences in fauna between these areas.     

Rats on the run: removal of alien terrestrial predators affects bush rat behaviour

Predators can strongly influence the microhabitat use and foraging behaviour of prey. In a large-scale replicated field experiment in East Gippsland, Australia, we tested the effects of reduced alien red fox (Vulpes vulpes) and alien wild dog (Canis lupus familiaris) abundance (treatment) on native bush rat (Rattus fuscipes) behaviour. Bush rats are exposed to two main guilds of predators, namely mammalian carnivores and birds of prey. Tracking rat movements using the spool-and-line technique revealed that, in treatment sites, rats used ground cover, which provides shelter from predators, less often than at unmanipulated fox and wild dog abundance (non-treatment sites). In treatment sites, rats more frequently moved on logs where they would have been exposed to hunting foxes and dogs than in non-treatment sites. Furthermore, in treatments, rats showed a preference for understorey but not in non-treatments. Hence, bush rats adapted their behaviour to removal of alien terrestrial predators. Giving-up densities (GUDs) indicated no treatment effects on the marginal feeding rate of bush rats. Interestingly, GUDs were higher in open patches than in sheltered patches, suggesting higher perceived predation risk of bush rats during foraging at low versus high cover. The lack of treatment effects on GUDs but the clear response of bush rats to cover may be explained by the impact of predators other than foxes and wild dogs.     

Heavy metals in soils and crops in Southeast Asia

In a reconnaissance soil geochemical and plant survey undertaken to study the heavy metal uptake by major food crops in Malaysia, 241 soils were analysed for cation exchange capacity (CEC), organic carbon (C), pH, electrical conductivity (EC) and available phosphorus (P) using appropriate procedures. These soils were also analysed for arsenic (As), cadmium (Cd), cobalt (Co), chromium (Cr), copper (Cu), mercury (Hg), nickel (Ni), lead (Pb) and zinc (Zn) using aqua regia digestion, together with 180 plant samples using nitric acid digestion. Regression analysis between the edible plant part and aqua regia soluble soil As, Cd, Cr, Cu, Hg, Ni, Pb and Zn concentrations sampled throughout Peninsular Malaysia, indicated a positive relationship for Pb in all the plants sampled in the survey (R ² = 0.195, p < 0.001), for Ni in corn (R ² = 0.649, p < 0.005), for Cu in chilli (R ² = 0.344, p < 0.010) and for Zn in chilli (R ² = 0.501, p < 0.001). Principal component analysis of the soil data suggested that concentrations of Co, Ni, Pb and Zn were strongly correlated with concentrations of Al and Fe, which is suggestive of evidence of background variations due to changes in soil mineralogy. Thus the evidence for widespread contamination of soils by these elements through agricultural activities is not strong. Chromium was correlated with soil pH and EC, Na, S, and Ca while Hg was not correlated with any of these components, suggesting diffuse pollution by aerial deposition. However As, Cd, Cu were strongly associated with organic matter and available and aqua regia soluble soil P, which we attribute to inputs in agricultural fertilisers and soil organic amendments (e.g. manures, composts).     

The density and size distribution of Diadema antillarum in Dominica (Lesser Antilles): 2001–2004

Diadema antillarum populations at many Caribbean locations have failed to recover from a wide-spread mortality event during the early 1980s. Quantitative assessments of Diadema in Dominica have only recently begun and can now be put into a regional context. Diadema and benthic algae were monitored in 4-month intervals at six 100 m² sites, spread over a distance of 38 km, along the west coast of Dominica. Diadema density surveys began in July 2001, while algal cover was monitored as of November 2001. Mean densities of individual sites ranged from 0.81 m⁻² (SD=1.02) to 2.98 m⁻² (SD=1.33), and overall means increased from 1.50 m⁻² (SD=0.12) in 2001, to 2.00 m⁻² (SD=0.05) in 2004. The weak negative relationship observed between the Diadema density and macroalgal cover (R ²=0.25, P=0.0030), indicates that Diadema play a limited role in controlling macroalgal species. In contrast, the abundance of turf algae was positively related to low Diadema densities, yet this relationship becomes negative beyond a critical point between 2.0 and 3.0 Diadema per m² (R ²=0.25, P=0.0075). As of November 2001 size measurements of 100 randomly sampled urchins at each site were included in the surveys, resulting in overall mean test size diameters ranging between 5.54 cm (SD=1.55) and 6.00 cm (SD=0.96). The mean test size diameter per site ranged from 4.54 cm (SD=1.91) at Tarou Point in November 2003 to 6.77 cm (SD=0.83) at Salisbury November 2001. Across all sites except Tarou Point, the most commonly occurring Diadema sizes throughout this study were within 1 cm, in the range between 4.5 and 7.5 cm. It is unclear how this Dominica scenario fits into the context of the pathogen-induced mass mortality events of the 1980s because neither qualitative nor quantitative records exist for that time in Dominica. The recent increase in Diadema density may be a symptom of recovery from Hurricane Lenny. Given the indiscriminant local pressure (affecting herbivorous fishes as well as fish predators of Diadema) Diadema’s role as grazer of algal turfs is highlighted. On a regional scale, its stable population of reproductive size classes may serve as source of larvae for nearby downstream islands.     

Seasonal change of species composition,abundance, and reproduction of solitary entoprocts in Okinawa Island,the Ryukyu Archipelago,Japan

Monthly samplings of solitary entoprocts were carried out at Mizugama and Ginowan Fishery Port, Okinawa Island, the central Ryukyus, Japan from November 2000 to November 2001. We examined the entoproct populations on the glass slides that had been placed at the two sites for 2 months, and a total of 18,322 individuals of solitary entoprocts were recorded. They were Loxomitra mizugamaensis, L. ryukyuensis, L. tetraorganon, Loxosomella aloxiata, L. intragemmata, L. lecythifera, L. monocera, L. stomatophora, and Loxocorone allax. Our analyses indicate that (1) the abundance of solitary entoprocts in this region is high in summer and low in winter, (2) most species reproduce by budding all year round, and (3) sexual reproduction is restricted to a short period in summer (July or August).     

Effects of low doses of bisphenol A and o,p ′- DDT on reproductive function of posthatching male Japanese quail

Forty-six posthatched male Japanese quail (Coturnix japonica) were divided into five groups; Control (n = 8), Oil (n = 8), 2 mg Bisphenol A (BPA) (n = 12), 20 µg o, p′-DDT (n = 11) and Mix [BPA (2 mg) and o, p′-DDT (20 µg)/10 µL] (n = 7). Chemicals were given orally to the quail daily for about 100 days. At day 90 of the experiment, sexual behavior was studied. Moreover, one day before the quail were sacrificed, cloacal gland areas were measured. All birds were scarified at 100 days. Testicular weights as well as gonado-somatic index were recorded. Sperm concentration was analyzed by the computer-assisted sperm analysis system. The testes of each bird were subjected to histopathological examination and the diameter of 30 randomly selected seminiferous tubules was measured. Sexual maturity was significantly delayed in o, p′-DDT and Mix groups. In addition, quail that were given BPA and o, p′-DDT took a significantly longer time to perform the first sexual interaction. The diameters of seminiferous tubules were remarkably reduced in all treated groups. In conclusion, low doses of BPA, o, p′-DDT or a combination of these two agents affected reproductive functions in male Japanese quail, when administered at posthatching.     

Food webs and intraguild predation: community interactions of a native mesocarnivore

Trophic level interactions between predators create complex relationships such as intraguild predation. Theoretical research has predicted two possible paths to stability in intraguild systems: intermediate predators either outcompete higher-order predators for shared resources or select habitat based on security. The effects of intraguild predation on intermediate mammalian predators such as swift foxes (Vulpes velox) are not well understood. We examined the relationships between swift foxes and both their predators and prey, as well the effect of vegetation structure on swift fox-coyote (Canis latrans) interactions, between August 2001 and August 2004. In a natural experiment created by the Pinon Canyon Maneuver Site in southeastern Colorado, USA, we documented swift fox survival and density in a variety of landscapes and compared these parameters in relation to prey availability, coyote abundance, and vegetation structure. Swift fox density varied significantly between study sites, while survival did not. Coyote abundance was positively related to the basal prey species and vegetation structure, while swift fox density was negatively related to coyote abundance, basal prey species, and vegetation structure. Our results support the prediction that, under intraguild predation in terrestrial systems, top predator distribution matches resource availability (resource match), while intermediate predator distribution inversely matches predation risk (safety match). While predation by coyotes may be the specific cause of swift fox mortality in this system, the more general mechanism appears to be exposure to predation moderated by shrub density.     

Annual reproductive cycle of the green sea urchin, Strongylocentrotus droebachiensis, in differing habitats in Nova Scotia, Canada

We monitored the reproductive cycle of Strongylocentrotus droebachiensis (OF Müller) between April 1993 and August 1995 in kelp beds, barren grounds and grazing fronts at both a wave-exposed and a sheltered site along the Atlantic coast of Nova Scotia. Gonad index and histological analyses showed that S. droebachiensis has an annual reproductive cycle that is synchronous across sites and habitats, and between females and males. Spawning occurs in March/April of each year but a small proportion of sea urchins in the study populations also spawned in fall 1995. During most of the year, sea urchins in kelp beds and grazing fronts have a higher gonad index than those in barren grounds. Gonad indices also tended to be higher at the wave-exposed than the sheltered site. Interannual variability in peak gonad index was significant in the barren grounds at the wave-exposed site and in the grazing front at the sheltered site. The gametogenic cycle is characterized by six stages based on the abundance of nutritive and germinal/gametic cells. Nutritive phagocytes are abundant after spawning and replaced by increasing numbers of germinal and gametic cells as the gametogenic cycle progresses. The temporal patterns of abundance of each cell type were similar among habitats indicating that the gonads were qualitatively similar despite large differences in gonadal mass. The quantity of gut contents (ratio of food volume to body volume) was similar among habitats, but the quality (percentage of organic material) tended to be higher in kelp beds and grazing fronts than in barren grounds suggesting that differences in gonad index of S. droebachiensis in different habitats are related to differences in diet. The high density of sea urchins in grazing fronts combined with their high fecundity suggests that they make the greatest contribution, per unit area, to the overall larval pool. Received: 20 May 1997 / Accepted: 21 January 1998     

Distribution of quinolone and macrolide resistance genes and their co-occurrence with heavy metal resistance genes in vegetable soils with long-term application of manure

The spread of antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) has become an increasingly serious global public health issue. This study investigated the distribution characteristics and influencing factors of ARB and ARGs in greenhouse vegetable soils with long-term application of manure. Five typical ARGs, four heavy metal resistance genes (MRGs), and two mobile genetic elements (MGEs) were quantified by real-time quantitative polymerase chain reaction (qPCR). The amount of ARB in manure-improved soil greatly exceeded that in control soil, and the bacterial resistance rate decreased significantly with increases in antibiotic concentrations. In addition, the resistance rate of ARB to enrofloxacin (ENR) was lower than that of tylosin (TYL). Real-time qPCR results showed that long-term application of manure enhanced the relative abundance of ARGs in vegetable soils, and the content and proportion of quinolone resistance genes were higher than those of macrolide resistance genes. Redundancy analysis (RDA) showed that qepA and qnrS significantly correlated with total and available amounts of Cu and Zn, highlighting that certain heavy metals can influence persistence of ARGs. Integrase gene intI1 correlated significantly with the relative abundance of qepA, qnrS, and ermF, suggesting that intI1 played an important role in the horizontal transfer of ARGs. Furthermore, there was a weakly but not significantly positive correlation between specific detected MRGs and ARGs and MGEs. The results of this study enhance understanding the potential for increasing ARGs in manure-applied soil, assessing ecological risk and reducing the spread of ARGs.

Graphic abstract