稀有鮈鲫神经发育相关基因的克隆、同源性分析及组织分布

作为重要的本土模式鱼类,稀有鮈鲫神经发育相关的生物学背景几乎空白,导致其在神经毒性评价方面的应用受到限制。本文从稀有鮈鲫脑部克隆得到了神经发育相关的神经生长因子(nerve growth factor;ngf)、脑源性神经营养因子(brain-derived neurotrophic factor;bdnf)、胶质纤维酸性蛋白(glial fibrillary acidic protein;gfap)、髓鞘相关糖蛋白(myelin-associated glycoprotein;mag)、P0蛋白(myelin protein zero;mpz)、微管蛋白α1(α1-tubulin)和Y染色体性别决定基因10(SRY-box containing gene 10;sox10)等基因的片段,并对其进化树及表达谱进行了分析。序列分析表明,bdnf的核苷酸序列与鲫鱼、鲤鱼的同源性最高,均为98%;gfap、ngf、mag和α1-tubulin与斑马鱼的同源性最高,分别为95%、92%、92%和96%;mpz与黑头软口鲦的同源性最高,为94%;sox10与鳙鱼同源性最高,达97%。表达谱分析结果表明,ngf、bdnf、mag、mpz、α1-tubulin和sox10基因均在脑组织中表达量最高,gfap在脊髓中表达量最高,上述结果为这一模式鱼类在神经发育学和神经毒性效应评价方面的应用奠定了基础。     

稀有鮈鲫细胞凋亡相关基因的克隆及序列分析

细胞凋亡是调控机体发育和维护内环境稳定的重要机制。在克隆了稀有鮈鲫(Gobiocypris rarus)肝脏组织中凋亡相关的bcl-2、apaf-1、caspase-3和caspase-9基因的部分cDNA片段之后,进行了序列分析。结果表明,caspase-3和caspase-9基因片段与唐鱼(Tanichthys albonubes)相对应的核苷酸序列同源性最高,而bcl-2、apaf-1基因片段则分别与鮈鱼(Gobio gobio)和鲤鱼(Cyprinus carpio)相对应的核苷酸序列同源性最高,为99%和89%。基于稀有鮈鲫和已知物种的caspase-3基因核苷酸序列构建了系统发育树,发现稀有鮈鲫与唐鱼、斑马鱼(Danio rerio)的亲缘关系最近,而与金头鲷(Sparus aurata)、红鳍东方鲀(Takifugu rubripes)的亲缘关系较远。本研究为深入理解外源性化学物质对鱼类的毒理学机制及其生态健康风险评价提供科学数据,同时也为稀有鮈鲫在鲤科鱼类的分类及进化地位的研究提供分子水平的重要参考。     

稀有鮈鲫Ras信号通路相关基因的克隆、序列分析及其组织分布

Ras基因是一类在生物进化过程中较为保守的原癌基因,在多种细胞生命活动中起到细胞增殖、分化和细胞骨架构建等重要作用。本文克隆了稀有鮈鲫Ras信号通路相关的k-ras、n-ras、pik3cd、pin1和raf1基因的部分c DNA片段,并分析了其序列。序列分析结果表明,k-ras的氨基酸序列与鲤鱼相对应的氨基酸序列同源性最高,为99%;n-ras、pik3cd、pin1和raf1的氨基酸序列均与斑马鱼相对应的氨基酸序列同源性最高,分别为99%、87%、96%和97%,结果表明稀有鮈鲫与鲤鱼、斑马鱼的亲缘关系较近。组织表达分析表明,k-ras、n-ras、pik3cd、pin1和raf1基因在肝脏、鳃、肾脏、脑和性腺等组织中具有表达差异性。本文为研究环境污染物对鱼类致癌作用机制和安全性评估提供分子生物学基础和科学依据。     

磷酸三(2,3-二氯丙基)酯阻燃剂对稀有鮈鲫的毒性效应

为研究新型阻燃剂磷酸三(2,3-二氯丙基)酯(TDCPP)的毒性效应,以稀有鮈鲫(Gobiocypris rarus)为实验生物,采用半静态实验方法,分别进行96 h和28 d的染毒,研究TDCPP对稀有鮈鲫的急性毒性和慢性毒性效应,并通过对稀有鮈鲫脑组织中与神经纤维的生长、发育、轴突再生等相关基因mRNA表达量的检测,初步探讨了TDCPP的神经毒性作用。结果表明：TDCPP对稀有鮈鲫的96 h-LC₅₀为2.99(2.20～3.38) mg·L^-1,根据化学物质对鱼类毒性分级标准TDCPP属于剧毒性。经0.9、1.5、2.1和2.7 mg·L^-1 TDCPP染毒28 d,与对照组相比,暴露组稀有鮈鲫肝脏及脑组织中SOD和GSH-Px的活性均受到抑制,且随着TDCPP的暴露浓度增加,其抑制作用显著增强;暴露组稀有鮈鲫脑组织中与神经纤维的生长、发育相关的微管蛋白α/β、神经丝NF-M以及关键蛋白GAP-43等基因的mRNA表达量,与对照相比均发生显著下调。可知,TDCPP暴露可以诱发稀有鮈鲫神经毒性作用。     

氰戊菊酯对斑马鱼和稀有鮈鲫不同生命阶段的毒性效应

为探明氰戊菊酯对鱼类不同生命阶段的毒性效应,以斑马鱼和稀有鮈鲫为测试生物,评价了氰戊菊酯对斑马鱼和稀有鮈鲫不同生命阶段的急性毒性差异。研究发现,氰戊菊酯对斑马鱼和稀有鮈鲫胚胎的96 h-LC50值分别为0.901(0.664~1.22)和0.636(0.233~1.74)mg·L~(-1)。氰戊菊酯对稀有鮈鲫胚胎孵化有明显的促进作用,染毒48 h后,0.188和0.375 mg·L~(-1)氰戊菊酯对稀有鮈鲫胚胎的孵化率分别为88.9%和100%。氰戊菊酯对斑马鱼仔鱼、幼鱼和成鱼的96 h-LC50值分别为0.00340、0.0183、0.00487 mg·L~(-1),氰戊菊酯对稀有鮈鲫仔鱼、幼鱼和成鱼的96 h-LC50值分别为0.0520、0.00277、0.00345 mg·L~(-1)。因此,氰戊菊酯对斑马鱼不同生命阶段的毒性从高到低顺序依次为:仔鱼成鱼幼鱼胚胎,氰戊菊酯对稀有鮈鲫胚胎、仔鱼、幼鱼和成鱼的毒性为幼鱼成鱼仔鱼胚胎。试验结果表明,斑马鱼仔鱼对氰戊菊酯的敏感性高于稀有鮈鲫相应的生命阶段,相对于斑马鱼,稀有鮈鲫胚胎、幼鱼以及成鱼对氰戊菊酯的毒性作用更为敏感,说明氰戊菊酯对斑马鱼和稀有鮈鲫不同生命阶段的毒性效应差异较大。     

三唑酮对斑马鱼和稀有鮈鲫不同生长阶段的急性毒性比较

为探明三唑酮对鱼类不同生长阶段的毒性效应,以斑马鱼和稀有鮈鲫为测试生物,检测了三唑酮对斑马鱼和稀有鮈鲫不同生长阶段的急性毒性差异。研究发现,三唑酮对斑马鱼和稀有鮈鲫胚胎为低毒,其96 h-LC50值分别为21.1(14.4~31.0)和14.2(9.65~20.9)mg·L~(-1);高浓度的三唑酮对斑马鱼和稀有鮈鲫胚胎的孵化有明显的抑制作用,染毒96 h后,23.7 mg·L~(-1)三唑酮组斑马鱼胚胎的孵化率为4.17%,22.5 mg·L~(-1)三唑酮组稀有鮈鲫胚胎的孵化率为33.3%。三唑酮对斑马鱼仔鱼、幼鱼和成鱼为低毒,其96 h-LC50值分别为24.8、21.3、13.1 mg·L~(-1),三唑酮对稀有鮈鲫仔鱼、幼鱼和成鱼为中毒,其96 h-LC50值分别为9.96、7.89、6.89 mg·L~(-1)。因此,三唑酮对斑马鱼和稀有鮈鲫不同生长阶段的毒性效应排序一致,毒性从高到低顺序依次为:成鱼幼鱼仔鱼。试验结果表明,相对于斑马鱼,稀有鮈鲫对三唑酮的毒性作用更为敏感,三唑酮对稀有鮈鲫不同生长阶段的毒性均高于斑马鱼相应生长阶段的毒性。     

不同硬度条件下Cd~(2+)和Cu~(2+)对稀有鮈鲫的急性毒性

为研究水体硬度对稀有鮈鲫Cd~(2+)和Cu~(2+)毒性效应的影响,开展了96 h急性毒性试验。试验结果发现,当水体硬度(以CaCO_3计,下同)为50 mg·L~(-1)、250 mg·L~(-1)、450 mg·L~(-1)时,Cd~(2+)对稀有鮈鲫的96 h半数致死浓度(96 h-LC50)分别为4.30 mg·L-1、12.06 mg·L~(-1)、19.99 mg·L~(-1),对应的安全浓度(SC)依次为0.430 mg·L~(-1)、1.206 mg·L~(-1)、1.999 mg·L~(-1);Cu~(2+)对稀有鮈鲫的96h-LC50分别为0.046 mg·L-1、0.148 mg·L~(-1)、0.228 mg·L~(-1),对应的SC依次为0.0046 mg·L~(-1)、0.0148 mg·L~(-1)、0.0228 mg·L~(-1)。计算得到Cd~(2+)对稀有鮈鲫急性毒性与水体硬度的拟合方程为ln 96 h-LC50=0.687 ln H~(-1).243(r=0.998);Cu~(2+)对稀有鮈鲫急性毒性与水体硬度的拟合方程为ln 96 h-LC50=0.727 ln H-5.923(r=0.999),Cd~(2+)和Cu~(2+)对稀有鮈鲫的硬度斜率分别为0.687和0.727。这些结果表明,水体硬度可有效降低Cd~(2+)和Cu~(2+)对稀有鮈鲫的急性毒性,且稀有鮈鲫的硬度斜率与其他物种差异较大。在评估不同硬度水体下Cd~(2+)和Cu~(2+)的生物毒性及其生态风险时,应根据测试物种特异的硬度斜率而定。     

三氯酚暴露致稀有鮈鲫肝脏损伤的比较蛋白质组研究

为探讨2,4,6-三氯酚(2,4,6-TCP)暴露致鱼类肝脏损伤的毒性效应,以稀有鮈鲫(Gobiocypris rarus)为模式生物,TCP暴露浓度为1、10、100μg·L-1,进行流水暴露实验(28d),利用二维凝胶电泳方法(2-DE),结合质谱分析技术(MALDI-TOF-MS),对TCP致稀有鮈鲫肝脏损伤的蛋白表达谱进行了研究.结果显示,共发现35个差异蛋白点,其中11个蛋白被成功鉴定(C.I.>95%).对鉴定的蛋白根据GOTerms进行功能分类,发现它们主要参与脂类代谢与转运、氧化应激以及蛋白修复和氧化磷酸化等生物学过程。以上结果表明,TCP对稀有鮈鲫具有明显的肝脏毒性效应.     

三氯酚暴露致稀有鮈鲫肝脏损伤的比较蛋白质组研究(Proteomic Analysis of Hepatic Protein Profiles in Rare Minnow （Gobiocypris rarus） Exposed to Trichlorophenol （TCP）)

为探讨2,4,6-三氯酚（2,4,6-TCP）暴露致鱼类肝脏损伤的毒性效应,以稀有鮈鲫（Gobiocypris rarus）为模式生物,TCP暴露浓度为1、10、100μg·L-1,进行流水暴露实验（28d）,利用二维凝胶电泳方法（2-DE）,结合质谱分析技术（MALDI-TOF-MS）,对TCP致稀有鮈鲫肝脏损伤的蛋白表达谱进行了研究. 结果显示,共发现35个差异蛋白点,其中11个蛋白被成功鉴定（C.I.>95%）. 对鉴定的蛋白根据GO Terms 进行功能分类,发现它们主要参与脂类代谢与转运、氧化应激以及蛋白修复和氧化磷酸化等生物学过程。以上结果表明,TCP对稀有鮈鲫具有明显的肝脏毒性效应.     

化学品生态毒性测试鱼类模式生物的应用与展望

水生生物毒性测试广泛应用于评估化学品的水生态环境安全,而鱼类生态毒性数据为水生生态风险评估与风险管理提供基础。本文总结了现有的鱼类水生毒性测试标准及常用的物种。阐述了常用水生鱼类模式生物,如斑马鱼Danio rerio、青鳉鱼Oryzias latipes、黑头软口鲦Pimephales promelas等作为模式鱼类的特征及在生态毒性测试中的应用。环保部7号令推荐稀有鮈鲫Gobiocypris rarus作为中国本土生物在水生毒性测试中使用。目前公开发表的利用稀有鮈鲫的水生毒性研究多集中在急性毒性方面,对其他类型的研究如法规毒理相关的长期慢性毒性有待开展。     

Phylogeography of the diamond turbot (Hypsopsetta guttulata) across the Baja California Peninsula

We compared morphology and sequenced nuclear and mitochondrial genes from 11 populations of a previously genetically unstudied “Baja California disjunct” species, the diamond turbot (Hypsopsetta guttulata). This species exhibits very limited adult movement and restriction to soft-bottom habitats but has a moderately long pelagic larval duration. Therefore, if pelagic larval duration is correlated with gene flow between Gulf of California and Pacific populations, we expect a reduced level of genetic and morphological differentiation. However, if adult habitat and ecology have more effect on gene flow, we expect the populations in the two bodies of water to be more highly differentiated. We used logistic regression to compare morphological features and phylogenetic and population genetic analyses to compare nucleotide sequence data. Gulf of California H. guttulata are different from Pacific populations in morphology and both mitochondrial and nuclear gene sequences. MtDNA shows reciprocal monophyly, and nuclear sequences from the Gulf of California formed a monophyletic group. Population genetic analyses also suggest further population subdivision within the Pacific and within the Gulf of California. We argue that adult ecology has a significant effect on migration rates among populations in the Pacific Ocean and the Gulf of California.     

近江牡蛎等7种养殖鱼虾贝类参照基因β-肌动蛋白cDNA序列的克隆与比较分析

为进一步研究水产养殖动物功能基因的表达调控,采用RT-PCR及RACE法,分离、克隆了近江牡蛎(Crassostrea ariakensis)肝脏β-肌动蛋白基因cDNA全序列.结果表明,近江牡蛎β-肌动蛋白基因cDNA全长1343bp,其中5′、3′非翻译区(UTR)分别长68bp、144bp,开放阅读框(ORF)为1131bp,编码376个氨基酸.实验同时成功获得了中华圆田螺(Cipangopaludina cahayensis)、日本沼虾(Macrobrachium nipponensis)、斑鳢(Channa maculata)、胡子鲶(Clarias fuscus)、鳙鱼(Aristichthys nobilis)、鲮鱼(Cirrhinus molitorella)6种重要淡水养殖动物肝脏β-肌动蛋白基因cDNA的核心序列及氨基酸序列.所获基因与其它动物类群的β-肌动蛋白基因氨基酸同源性高达96%以上,表明软体类、节肢类、鱼类、两栖类、鸟类和哺乳类等不同类群动物β-肌动蛋白基因在生物进化过程中高度保守.系统发育分析显示软体类、节肢类、鱼类、两栖类、鸟类和哺乳类脊椎动物β-肌动蛋白分类与传统的分类基本一致.     

Genetic structuring of <Emphasis Type="Italic">Latris lineata</Emphasis> at localized and transoceanic scales

Striped trumpeter (Latris lineata) is a demersal teleost distributed around the temperate clines of all the major oceans in the southern hemisphere. Within Tasmanian waters the species is managed as a single stock, although no studies have been performed to confirm genetic panmixia. A protracted pelagic larval phase and a recent transoceanic tag recapture of an adult fish suggest significant potential for genetic mixing between widely separated populations. Phylogenetic analysis of mitochondrial DNA control region sequences suggested no genetic mixing between Tasmania, New Zealand and St Paul/Amsterdam Islands, evidence for the first time that there is population structure at a transoceanic scale for this species. In addition, an analysis of molecular variance coupled with phylogenetic analyses suggested no significant structuring of striped trumpeter from three locations around Tasmania. The information provided in this study is useful for the design of modern fisheries management techniques such as spatially implemented marine reserves. In addition, species-by-species knowledge about population structures of marine species facilitates ecologically useful generalizations concerning their population dynamics and key issues on the broader ecology of the oceans.     

基于rpoC1基因的微囊藻属分子系统学研究

测定了广东省9个水库4株铜绿微囊藻Microcystis aeruginosa、5株水华微囊藻M.flos-aquae和4株未定种微囊藻rpoC1基因部分序列,结合GenBank下载的日本5个水体11株铜绿微囊藻、5株绿色微囊藻M.viridis和5株惠氏微囊藻M.wesenbergii间源序列,进行序列分析.结果显示,34株微囊藻存在21种基因型,序列相似性达97.6%～100%.在邻接树上不同形态种和不同地理来源的藻株混杂在一起,没有形成明显的谱系结构和地理结构:同一形态种藻株可能具有不同的基因型,而相同基因型的藻株可能是不同的形态种;从同一水体中分离的微囊藻具有不同的形态种和不同的基因型,而不同水体分离的微囊藻有时又具有相同基因型,表明rpoC1基因序列无法区分形态种和地理株,支持Kondo和Otsuka提出的暂将铜绿微囊藻、水华微囊藻、惠氏微囊藻和绿色微囊藻等归为铜绿微囊藻复合种的分类处理.     

Phylogenetic diversity of NO reductases,new tools for nor monitoring,and insights into N2O production in natural and engineered environments

● 548 representative nor genes were collected to create complete phylogenetic trees. ● The distribution of nor and nod genes were detected in 18 different phyla. ● The most conserved amino acids in NOR were located adjacent to the active site. ● nor-universal and Clade-specific primers were designed, suggested, and tested. Nitric oxide reductases (NORs) have a central role in denitrification, detoxification of nitric oxide (NO) in host-pathogen interactions, and NO-mediated cell-cell signaling. In this study, we focus on the phylogeny and detection of qNOR and cNOR genes because of their nucleotide sequence similarity and evolutionary relatedness to cytochrome oxidases, their key role in denitrification, and their abundance in natural, agricultural, and wastewater ecosystems. We also include nitric oxide dismutase (NOD) due to its similarity to qNOR. Using 548 nor sequences from publicly accessible databases and sequenced isolates from N₂O-producing bioreactors, we constructed phylogenetic trees for 289 qnor/nod genes and 259 cnorB genes. These trees contain evidence of horizontal gene transfer and gene duplication, with 13.4% of the sequenced strains containing two or more nor genes. By aligning amino acid sequences for qnor + cnor, qnor, and cnor, we identified four highly conserved regions for NOR and NOD, including two highly conserved histidine residues at the active site for qNOR and cNOR. Extending this approach, we identified conserved sequences for: 1) all nor (nor-universal); 2) all qnor (qnor-universal) and all cnor (cnor-universal); 3) qnor of Comamonadaceae; 4) Clade-specific sequences; and 5) nod of Candidatus Methylomirabilis oxyfera. Examples of primer performance were confirmed experimentally.     

Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae

DNA sequences for a 639 bp region of mitochondrial cytochrome oxidase I (mtCOI) were determined for 34 species of ten genera in two families of calanoid copepods, including: Calanoides, Cosmocalanus, Meoscalanus, Nannocalanus, Neocalanus, and Undinula (family Calanidae); and Clausocalanus, Ctenocalanus, Drepanopus, and Pseudocalanus (family Clausocalanidae). MtCOI gene sequences proved to be diagnostic molecular systematic characters for accurate identification and discrimination of the species. Levels of mtCOI variation within species (range: 1-4%) were significantly less than those between species (9-25%). Higher levels of intraspecific variation (>2%) usually resulted from comparisons between ecologically distinct or geographically isolated populations. MtCOI sequence variation resolved evolutionary relationships among species of Clausocalanus, Neocalanus, and Pseudocalanus, although there was evidence of saturation at some variable sites. Phylogenetic relationships among 11 copepod genera (adding Calanus to the list above) were reconstructed using a 660 bp region of nuclear small-subunit 18S rRNA, a slowly evolving gene that showed no variability within a species and differed by <1-6% among the genera. The 18S rRNA molecular phylogeny was consistent with the accepted limits of the Calanidae and Clausocalanidae and clearly resolved relationships among genera within each family. This molecular systematic and phylogenetic study was part of the ZooGene project, an international partnership to create a DNA sequence database as a tool for uniform, molecularly based species identification of planktonic calanoid copepods and euphausiids.     

Some notes on the population dynamics of the monogenean gill parasite Gastrocotyle indica

The fish Caranx kalla of different size groups (2 to 18 cm body length) is present during various calender months of the year off the Madras coast (S. India). C. kalla displays a definite progressive shift in growth during successive months; the fish grows from 2 cm (September) to about 18 cm (August) over a period of 12 months. The highest (47%) or lowest (11%) incidence of a monogenean gill parasite Gastrocotyle indica has been observed in the C. kalla size groups 2.0 to 3.9 cm or 16.0 to 17.9 cm; however, the maximum specific density of 10.9 parasite/infested fish was observed in the size group 14.0 to 15.9 cm. Small fish (2.0 to 3.9 cm) carry only larvae (58/100 fish); larger hosts (4.0 to 5.9 cm) larvae (45/100 fish) and juveniles (8/100 fish); individuals of the 6.0 to 15.9 cm size group harbour larval, juvenile and adult stages of G. indica. Fishes of more than 16 cm carry only adult parasites. The level of parasitization is higher on the male hosts (30% incidence; 5 parasites/infested male) than on the females (25% incidence; 4 parasites/infested female). The highest incidences of larval, juvenile and adult G. indica occur in September, February, and May, respectively; the parasite seems to live for 1 year. The host requires a period of about 8 months to acquire immunity against infestation by G. indica or copepod parasites.     

DNA barcoding of Pacific Canada’s fishes

DNA barcoding—sequencing a standard region of the mitochondrial cytochrome c oxidase 1 gene (COI)—promises a rapid, accurate means of identifying animals to a species level. This study establishes that sequence variability in the barcode region permits discrimination of 98% of 201 fish species from the Canadian Pacific. The average sequence variation within species was 0.25%, while the average distance separating species within genera was 3.75%. The latter value was considerably lower than values reported in other studies, reflecting the dominance of the Canadian fauna by members of the young and highly diverse genus Sebastes. Although most sebastids possessed distinctive COI sequences, four species did not. As a partial offset to these cases, the barcode records indicated the presence of a new, broadly distributed species of Paraliparis and the possibility that Paraliparis pectoralis is actually a species pair. The present study shows that most fish species in Pacific Canadian waters correspond to a single, tightly cohesive array of barcode sequences that are distinct from those of any other species, but also highlights some taxonomic issues that need further investigation.