An accessory marker derived from chromosome 20 and its co-existence with a mosaic trisomy 20 cell line

We report a 16-month-old boy with delayed psychomotor development, dysmorphic features, and failure to thrive. He had a mosaic karyotype detected prenatally: mos 46,XY/47,XY,+r(20)/47,XY,+20. After birth, the abnormal cell lines were confirmed in a number of tissues. The small ring chromosome was identified using fluorescence in situ hybridization as derived from chromosome 20. We compared our patient with previously reported cases of mosaic trisomy 20 detected prenatally and associated with an abnormal phenotype. In an attempt to characterize an r(20) syndrome, we also compared our case with two similar reports in the literature.     

Non-mosaic trisomy 20 presenting at 21 weeks' gestation as a thoraco-abdominal mass

Non-mosaic trisomy 20 is rare in fetuses surviving beyond the first trimester. We report a case of a fetus with non-mosaic trisomy 20 in amniotic fluid cultures obtained during the prenatal evaluation of an unusual thoraco-abdominal mass which was found at autopsy to be pulmonary sequestration. Gross inspection and autopsy of the fetus revealed multiple anomalies. Copyright © 2001 John Wiley & Sons, Ltd.     

Effects of Land-Use and Tsetse Fly Control on Bird Species Richness in Southwestern Ethiopia

Successful control of tsetse (Glossina spp.)-transmitted trypanosomiasis in the Ghibe Valley, Ethiopia, appears to have accelerated conversion of wooded grassland into cropland. Land conversion, in turn, may have fragmented wildlife habitat. Our objective was to assess the influence of the expansion of agricultural land-use, brought about by tsetse control, on ecological properties by using bird species richness and composition as indicators of environmental impacts. We sampled bird species richness and composition (using Timed-Species counts) and habitat structure (using field sampling and remote sensing) in four land cover/land-use types in areas subjected to tsetse fly control and adjacent areas without control. At the height of the growing season bird species numbers and vegetative complexity were greater in the small-holder, oxen-plowed fields and riparian woodlands than in wooded grasslands or in large-holder, tractor-plowed fields. Species composition was highly dissimilar (40–70% dissimilarity) comparing among land-use types, with many species found only in a single type. This implies that trypanosomiasis control that results in land conversion from wooded grasslands to small-holder farming in this region may have no adverse impacts on bird species numbers but will alter composition. These results also suggest that moderate land-use by humans (e.g., small-holder field mosaics) increases habitat heterogeneity and bird species richness relative to high levels of use (e.g., tractor-plowed fields). Tsetse control may be indirectly maintaining species richness in the valley by encouraging the differential spread of these small-scale, heterogeneous farms in place of large-scale, homogeneous farms. Nevertheless, if the extent of small-holder farms significantly exceeds that of present levels, negative impacts on bird species richness and large shifts in species composition may occur.     

Diplomacy for science: strategies to promote international collaboration

Technology innovation is an increasingly globalized exercise with dramatic consequences for scientific and diplomatic goals alike, and requires enhanced participation and integration of scientists and science-minded diplomats within diplomatic missions to advance shared policy goals. This more general problem is addressed in the present article by focusing on recent collaborations between U.S. and German scientists, including several of the coauthors.     

Assessing the wildlife habitat value of New England salt marshes: I. Model and application

We developed an assessment model to quantify the wildlife habitat value of New England salt marshes based on marsh characteristics and the presence of habitat types that influence habitat use by terrestrial wildlife. Applying the model to 12 salt marshes located in Narragansett Bay, RI resulted in assessment scores that ranged over a factor of 1.5 from lowest to highest. Pre-classifying the results based on marsh size and morphology helped to compare assessment scores between marshes, and demonstrated that even the lower ranking marshes had substantial habitat value. Stepwise multiple regression analysis of assessment scores and model components demonstrated that salt marsh morphology, the degree of anthropogenic modification, and salt marsh vegetative heterogeneity were significant variables and accounted for 91.3% of the variability in component scores. Our results suggest that targeting these components for restoration may lead to improved assessment scores for our study marshes. We also examined the use of lower resolution remote sensing data in the assessment in order to minimize the time and effort required to complete the model. Scores obtained using smaller-scale, lower resolution data were significantly lower than those obtained using larger-scale, higher resolution data (df = 11; t = 2.2; p < 0.001). The difference was significantly positively correlated with the portion of the assessment score that could be attributed to trees, pools, and pannes and marsh size (r (2) =0.50, F = 4.6, p = 0.04), and could indicate a bias against smaller, more heterogeneous marshes. We conclude that potential differences need to be weighed against the time benefit of using this type of data, bearing in mind the marsh size and the goals of the assessment. Overall, our assessment can provide information to aid in prioritizing marshes for protection and restoration, identify marshes that may harbor significant biodiversity, or help monitor changes in habitat value over time.     

Denitrification enzyme activity of fringe salt marshes in New England (USA)

Coastal salt marshes are a buffer between the uplands and adjacent coastal waters in New England (USA). With increasing N loads from developed watersheds, salt marshes could play an important role in the water quality maintenance of coastal waters. In this study we examined seasonal relationships between denitrification enzyme activity (DEA) in salt marshes of Narragansett Bay, Rhode Island, and watershed N loadings, land use, and terrestrial hydric soils. In a manipulative experiment, the effect of nutrient enrichment on DEA was examined in a saltmeadow cordgrass [Spartina patens (Aiton) Muhl.] marsh. In the high marsh, DEA significantly (p < 0.05) increased with watershed N loadings and decreased with the percent of hydric soils in a 200-m terrestrial buffer. In the low marsh, we found no significant relationships between DEA and watershed N loadings, residential land development, or terrestrial hydric soils. In the manipulation experiment, we measured increased DEA in N-amended treatments, but no effect in the P-amended treatments. The positive relationships between N loading and high marsh DEA support the hypothesis that salt marshes may be important buffers between the terrestrial landscape and estuaries, preventing the movement of land-derived N into coastal waters. The negative relationships between marsh DEA and the percent of hydric soils in the adjacent watershed illustrate the importance of natural buffers within the terrestrial landscape. Denitrification enzyme activity appears to be a useful index for comparing relative N exposure and the potential denitrification activity of coastal salt marshes.     

Use of computed tomography imaging for quantifying coarse roots, rhizomes, peat, and particle densities in marsh soils

Computed tomography (CT) imaging has been used to describe and quantify subtidal, benthic animals such as polychaetes, amphipods, and shrimp. Here, for the first time, CT imaging is used to quantify wet mass of coarse roots, rhizomes, and peat in cores collected from organic-rich (Jamaica Bay, New York) and mineral (North Inlet, South Carolina) Spartina alterniflora soils. Image analysis software was coupled with the CT images to measure abundance and diameter of the coarse roots and rhizomes in marsh soils. Previously, examination of marsh roots and rhizomes was limited to various hand-sieving methods that were often time-consuming, tedious, and error prone. CT imaging can discern the coarse roots, rhizomes, and peat based on their varying particle densities. Calibration rods composed of materials with standard densities (i.e., air, water, colloidal silica, and glass) were used to operationally define the specific x-ray attenuations of the coarse roots, rhizomes, and peat in the marsh cores. Significant regression relationships were found between the CT-determined wet mass of the coarse roots and rhizomes and the hand-sieved dry mass of the coarse roots and rhizomes in both the organic-rich and mineral marsh soils. There was also a significant relationship between the soil percentage organic matter and the CT-determined peat particle density among organic-rich and mineral soils. In only the mineral soils, there was a significant relationship between the soil percentage organic matter and the CT-determined peat wet mass. Using CT imaging, significant positive nitrogen fertilization effects on the wet masses of the coarse roots, rhizomes, and peat, and the abundance and diameter of rhizomes were measured in the mineral soils. In contrast, a deteriorating salt marsh island in Jamaica Bay had significantly less mass of coarse roots and rhizomes at depth (10-20 cm), and a significantly lower abundance of roots and rhizomes compared with a stable marsh. However, the diameters of the rhizomes in the deteriorating marsh were significantly greater than in the stable marsh. CT imaging is a rapid approach to quantify coarse roots, rhizomes, peat, and soil particle densities in coastal wetlands, but the method is unable at this time to quantify fine roots.     

Varying Stable Nitrogen Isotope Ratios of Different Coastal Marsh Plants and Their Relationships with Wastewater Nitrogen and Land Use in New England, USA

The stable nitrogen isotope ratios of some biota have been used as indicators of sources of anthropogenic nitrogen. In this study the relationships of the stable nitrogen isotope ratios of marsh plants, Iva frutescens (L.), Phragmites australis (Cav.) Trin ex Steud, Spartina patens (Ait.) Muhl, Spartina alterniflora Loisel, Ulva lactuca (L.), and Enteromorpha intestinalis (L.) with wastewater nitrogen and land development in New England are described. Five of the six plant species (all but U. lactuca) showed significant relationships of increasing δ ¹⁵N values with increasing wastewater nitrogen. There was a significant (P < 0.0001) downward shift in the δ ¹⁵N of S. patens (6.0 ± 0.48‰) which is mycorrhizal compared with S. alterniflora (8.5 ± 0.41‰). The downward shift in δ ¹⁵N may be caused by the assimilation of fixed nitrogen in the roots of S. patens. P. australis within sites had wide ranges of δ ¹⁵N values, evidently influenced by the type of shoreline development or buffer at the upland border. In residential areas, the presence of a vegetated buffer (n = 24 locations) significantly (P < 0.001) reduced the δ ¹⁵N (mean = 7.4 ± 0.43‰) of the P. australis compared to stands where there was no buffer (mean = 10.9 ± 1.0‰; n = 15). Among the plant species, I. frutescens located near the upland border showed the most significant (R ² = 0.64; P = 0.006) inverse relationship with the percent agricultural land in the watershed. The δ ¹⁵N of P. australis and I. frustescens is apparently an indicator of local inputs near the upland border, while the δ ¹⁵N of Spartina relates with the integrated, watershed-sea nitrogen inputs.     

Relationships between watershed emergy flow and coastal New England salt marsh structure, function, and condition

This study evaluated the link between watershed activities and salt marsh structure, function, and condition using spatial emergy flow density (areal empower density) in the watershed and field data from 10 tidal salt marshes in Narragansett Bay, RI, USA. The field-collected data were obtained during several years of vegetation, invertebrate, soil, and water quality sampling. The use of emergy as an accounting mechanism allowed disparate factors (e.g., the amount of building construction and the consumption of electricity) to be combined into a single landscape index while retaining a uniform quantitative definition of the intensity of landscape development. It expanded upon typical land use percentage studies by weighting each category for the intensity of development. At the RI salt marsh sites, an impact index (watershed emergy flow normalized for marsh area) showed significant correlations with mudflat infauna species richness, mussel density, plant species richness, the extent and density of dominant plant species, and denitrification potential within the high salt marsh. Over the 4-year period examined, a loading index (watershed emergy flow normalized for watershed area) showed significant correlations with nitrite and nitrate concentrations, as well as with the nitrogen to phosphorus ratios in stream discharge into the marshes. Both the emergy impact and loading indices were significantly correlated with a salt marsh condition index derived from intensive field-based assessments. Comparison of the emergy indices to calculated nitrogen loading estimates for each watershed also produced significant positive correlations. These results suggest that watershed emergy flow is a robust index of human disturbance and a potential tool for rapid assessment of coastal wetland condition.     

Characterizing Small Subbasins: A Case Study from Coastal Oregon

A fine-grained statisticaly robust probability sample of stream segments is used to compare two small (20,000 hectare) subbasins of the Tillamook watershed, north coastal Oregon. The two subbasins are matched with respect to several variables [size coastal climates], but vary in terms of geology and consequently land use. A total of 67 wadeable + non-wadeable sizes were identified for sampling in the two subbasins (combined) over two field seasons from a sampling universe consisting of the River Reach File 3 (blue lines on 1:100,000 maps). Target variables include an extensive array of physical habitat endpoints, selected water chemistry endpoints, species composition, and relative abundance of both benthic macroinvertebrates and fish. Field protocols generally followed those of the U.S. EPA's Environmental Monitoring and Assessment Program (EMAP).Eleven fish species were encountered, a typically low number for coastal Oregon streams. Exploratory analysis using nonmetric multidimensional scaling revealed that 92.4% of the variation in the fish assemblages could be explained with two ordination axes. Environmental factors related to stream size and substate were the most correlated to these axes. Further, stream segments for the two subbasins tended to map in different areas of species space. Therefore, we also give unweighted probability distributions for several of the factors that heavily on these two axes by subbasins, as well as probability distributions for chemical endpoints. Results from the subset of sites sampled during the first year (21 wadeable sites) reveal: 1) differences between samples from the two subbasins relates to dream size and substrate composition that are consistent with known differences in geology and land use, 2) unexpectedly minor differences between samples from the two subbasins for stream temperature, canopy cover, and dissolved oxygen, 3) differences between samples from the two subbasins for total P, and total N, possibly related to land use, and 4) unexpected differences in samples from the two subbasins for conductivity, probably related to geological factors. Sample size for each subbasin is low and therefore our samples cannot be taken to necessarily characterize either subbasin. However, our findings are consistent with a comprehensive assessment that had been previously produced for one of the two subbasins.All field work was completed in 8 weeks 3-person field crew. We conclude that rapid assessment protocols, based on probability samples at this level of resolution, can be a cost-effective approach to watershed analysis. This approach should be seen as a complement to, rather than a replacement for, systematic surveys that produced finer scale, reach specific information on factors such as channel complexity and cover relevant to in-stream restoration planning.