An inverse ecosystem model of year-to-year variations with first order approximation to the annual mean fluxes

Ecosystems exhibit nonlinear dynamics that are often difficult to capture in models. Consequently, linearization is commonly applied to remove some of the uncertainties associated with the nonlinear terms. However, since the true model is unknown and the operating point to linearize the model about is uncertain, developing linear ecosystems models is non-trivial. To develop a linear ecosystem model, we assume that the annual mean state of an ecosystem is a minor bias from the long-term mean state. A first order approximation inverse model to govern the year-to-year dynamics of ecosystems whose characteristic time scales are less than 1 year is developed, through theoretically formulation, on the basis of steady state analysis, time scale separation and nondimensionalization. The approach is adept at predicting year-to-year variations and to tracking system response to changes in environmental drivers when compared to data generated with a standard nonlinear NPZD model.     

土壤中地乐酚降解的实验研究

利用一系列批实验来研究地乐酚在不同土壤样本中的非生物降解和生物降解，并对各土壤特性与降解参数的相关性作统计分析。结果表明地乐酚的降解主要是生物降解。地乐酚在土壤中降解缓慢，加上实验土壤对地乐酚的弱吸附，因此地乐酚对当地地下水资源存在较大的威胁。在本实验地区降解参数服从正态分布。在水平α=0．05下，地乐酚的降解与已知的几种土壤特性以及吸附的相关性不显著。     

Pollution and biodegradation of hexabromocyclododecanes: A review

• Bioremediation is the most cost-effective approach for degradation of HBCDs. • Bacteria or bacterial consortia are used in the cases of bio-augmentation. • Microbes combined with phytoremediation increase the remediation efficiency. Hexabromocyclododecanes (HBCDs) are the most common brominated flame-retardants after polybrominated diphenyl ethers. HBCDs can induce cancer by causing inappropriate antidiuretic hormone syndrome. Environmental contamination with HBCDs has been detected globally, with concentrations ranging from ng to mg. Methods to degrade HBCDs include physicochemical methods, bioremediation, and phytoremediation. The photodegradation of HBCDs using simulated sunlight or ultraviolet lamps, or chemical catalysts are inefficient and expensive, as is physicochemical degradation. Consequently, bioremediation is considered as the most cost-effective and clean approach. To date, five bacterial strains capable of degrading HBCDs have been isolated and identified: Pseudomonas sp. HB01, Bacillus sp. HBCD-sjtu, Achromobacter sp. HBCD-1, Achromobacter sp. HBCD-2, and Pseudomonas aeruginosa HS9. The molecular mechanisms of biodegradation of HBCDs are discussed in this review. New microbial resources should be explored to increase the resource library in order to identify more HBCD-degrading microbes and functional genes. Synthetic biology methods may be exploited to accelerate the biodegradation capability of existing bacteria, including modification of the degrading strains or functional enzymes, and artificial construction of the degradation microflora. The most potentially useful method is combining micro-degradation with physicochemical methods and phytoremediation. For example, exogenous microorganisms might be used to stimulate the adsorption capability of plants for HBCDs, or to utilize an interaction between exogenous microorganisms and rhizosphere microorganisms to form a new rhizosphere microbial community to enhance the biodegradation and absorption of HBCDs.     

Use of metal-reducing bacteria for bioremediation of soil contaminated with mixed organic and inorganic pollutants

Mixed contamination by organic and inorganic compounds in soil is a serious problem for remediation. Most laboratory studies and field-scale trials focused on individual contaminant in the past. For concurrent bioremediation by biodegradation and bioleaching processes, we tested metal-reducing microorganism, Geobacter metallireducens. In order to prove the feasibility of the coupled process, multiple-contaminated soil was prepared. Mineralogical analyses have shown the existence of labile forms of As(V) as amorphous and/or weakly sorbed phases in the secondary Fe oxides. In the biotic experiment using G. metallireducens, biodegradation of toluene and bioleaching of As by bacteria were observed simultaneously. Bacteria accelerated the degradation rate of toluene with reductive dissolution of Fe and co-dissolution of As. Although there have been many studies showing each individual process, we have shown here that the idea of concurrent microbial reaction is feasible. However, for the practical use as a remediation technology, more details and multilateral evaluations are required in future studies.

     

Removal of atrazine from river waters by indigenous microorganisms

We report the first data for atrazine removal in low-turbidity freshwaters. Atrazine is a globally applied herbicide, contamination by which may lead to direct and indirect ecotoxicological impacts. Although a common contaminant of surface waters, microbial biodegradation of atrazine in this environment has been little studied, with most work focused on soils by means of selected, atrazine-degrading bacteria-enriched cultures. Here, we measured atrazine removal from river water using a batch incubation system designed to represent environmental conditions, with water from two contrasting UK rivers, the Tamar and Mersey. Atrazine and bacterial inocula prepared from the source water were added to cleaned river water for 21-day incubations that were analysed directly by electrospray ionisation-mass spectrometry. The experimental approach was validated using peptides of different molecular mass. Results show that atrazine concentrations decreased by 11% over 21 days in Tamar samples, a rural catchment with low population density, when atrazine was the only substrate added. In contrast no removal was evident in Mersey samples, an urban catchment with high population density. When a tripeptide was added as a co-substrate, atrazine removal in the Tamar water remained at 11% while that for the Mersey water increased from 0 to 37%. Although degradation of atrazine in aerobic freshwaters is predicted according to its chemical structure, our data suggest that the composition of the bacterial population determines whether removal occurs under these conditions and at these environmentally realistic concentrations.     

Use of metal-reducing bacteria for bioremediation of soil contaminated with mixed organic and inorganic pollutants

Mixed contamination by organic and inorganic compounds in soil is a serious problem for remediation. Most laboratory studies and field-scale trials focused on individual contaminant in the past. For concurrent bioremediation by biodegradation and bioleaching processes, we tested metal-reducing microorganism, Geobacter metallireducens. In order to prove the feasibility of the coupled process, multiple-contaminated soil was prepared. Mineralogical analyses have shown the existence of labile forms of As(V) as amorphous and/or weakly sorbed phases in the secondary Fe oxides. In the biotic experiment using G. metallireducens, biodegradation of toluene and bioleaching of As by bacteria were observed simultaneously. Bacteria accelerated the degradation rate of toluene with reductive dissolution of Fe and co-dissolution of As. Although there have been many studies showing each individual process, we have shown here that the idea of concurrent microbial reaction is feasible. However, for the practical use as a remediation technology, more details and multilateral evaluations are required in future studies.     

Effects of hydroxypropyl-β-cyclodextrin on pyrene and benzo[α]pyrene: bioavailability and degradation in sotil

Effect of hydroxypropyl-β-cyclodextrin (HPCD) on the bioavailability and biodegradation of the polycyclic aromatic hydrocarbons (PAHs) pyrene (PYR) and benzo[α]pyrene (BaP) in spiked soils was investigated in 14-week incubation experiments. To evaluate the effect of HPCD in soils with a different matrix, humic substance (HS) was added into soil samples. A 6-h Tenax TA extraction method was used to evaluate pollutants bioavailability. The biodegraded and extracted fractions were compared to evaluate the impact of HPCD on PAHs biodegradation. Results indicated positive effects of HPCD on fast desorption behaviours of PAHs. The biodegraded fraction was consistent with that of the extracted for PYR. However, in terms of BaP, the results were contrary which suggests that biological factors may be limiting factors for BaP pollution remediation. HS weakened the HPCD solubilisation effect while accelerated the decay of PYR and BaP, also implying that bioavailability was not the sole factor limiting PAH biodegradation. In addition, analysis of microbial communities demonstrated that HPCD inhibited the growth of some soil bacteria while HS promoted the evolution of some soil microorganisms. A limited population of hydrocarbon degrader populations led to observing incomplete PAH biodegradation even in the presence of HPCD.     

Use of metal-reducing bacteria for bioremediation of soil contaminated with mixed organic and inorganic pollutants

Mixed contamination by organic and inorganic compounds in soil is a serious problem for remediation. Most laboratory studies and field-scale trials focused on individual contaminant in the past. For concurrent bioremediation by biodegradation and bioleaching processes, we tested metal-reducing microorganism, Geobacter metallireducens. In order to prove the feasibility of the coupled process, multiple-contaminated soil was prepared. Mineralogical analyses have shown the existence of labile forms of As(V) as amorphous and/or weakly sorbed phases in the secondary Fe oxides. In the biotic experiment using G. metallireducens, biodegradation of toluene and bioleaching of As by bacteria were observed simultaneously. Bacteria accelerated the degradation rate of toluene with reductive dissolution of Fe and co-dissolution of As. Although there have been many studies showing each individual process, we have shown here that the idea of concurrent microbial reaction is feasible. However, for the practical use as a remediation technology, more details and multilateral evaluations are required in future studies.     

Spatial prediction of soil contamination based on machine learning: a review

● A review of machine learning (ML) for spatial prediction of soil contamination. ● ML have achieved significant breakthroughs for soil contamination prediction. ● A structured guideline for using ML in soil contamination is proposed. ● The guideline includes variable selection, model evaluation, and interpretation. Soil pollution levels can be quantified via sampling and experimental analysis; however, sampling is performed at discrete points with long distances owing to limited funding and human resources, and is insufficient to characterize the entire study area. Spatial prediction is required to comprehensively investigate potentially contaminated areas. Consequently, machine learning models that can simulate complex nonlinear relationships between a variety of environmental conditions and soil contamination have recently become popular tools for predicting soil pollution. The characteristics, advantages, and applications of machine learning models used to predict soil pollution are reviewed in this study. Satisfactory model performance generally requires the following: 1) selection of the most appropriate model with the required structure; 2) selection of appropriate independent variables related to pollutant sources and pathways to improve model interpretability; 3) improvement of model reliability through comprehensive model evaluation; and 4) integration of geostatistics with the machine learning model. With the enrichment of environmental data and development of algorithms, machine learning will become a powerful tool for predicting the spatial distribution and identifying sources of soil contamination in the future.     

水-硅油双相体系对多环芳烃降解菌的筛选及鉴定

选用水-硅油双相体系驯化筛选降解多环芳烃的优势菌株。筛选体系为：50mL无机盐溶液＋10mL硅油。从74瓶富集液中,对降解效果明显的富集液进行多环芳烃降解率的液相色谱定量测定。对蒽的降解率最高为45%;对荧蒽的降解率最高为99%,几乎全部降解,对苯并[a]芘的降解率为27%。筛选到一株能够高效降解蒽、菲、芘、荧蒽的菌株,编号LD29,鉴定结果为矢野口鞘氨醇杆菌LD29（Sphingobium yanoikuyae LD29）。富集液Y12对5种多环芳烃的降解效果同样很明显。     

Myriophyllum spicatum als ökotoxikologischer Testorganismus: Methodenentwicklung eines sedimentfreien Testsystems und erste Ergebnisse mit 3,5-Dichlorphenol

Background, aim, and scope The use of plant protection products is common practice in modern agriculture and forestry. Their use, however, may result in risks for the environment because even correct application can not always prevent a possible contamination of the off-field environment. A contamination of surface waters may occur through driftage, precipitation, run-off and drainage from treated surfaces. Dicotyledonous macrophytes are not part of the initial risk assessment of plant protection products in the aquatic environment although they are an important part of the ecosystem. This paper presents a standardised single-phase test system with the dicotyledonous water milfoil Myriophyllum spicatum (Haloragaceae). Methods In order to obtain substance-specific ecotoxicity data, a single-phase test system without sediment was chosen, in order to obtain results that are independent of the distribution of the test substances between water and sediment. The exposure of the test-plants only in the water phase reduces time and effort for analytics and facilitates modelling of the results. Also, a direct comparison with results from investigations with the monocotyledonous duckweed Lemna spec. (OECD Guideline 221) is possible: Ecotoxicity tests on Lemna spec. represent a standard test system for herbicides. Results, discussion, conclusions Myriophyllum spicatum is exposed for 14 days under axenic conditions in a climatised incubator. Ecotoxicity in terms of growth inhibition in Myriophyllum spicatum is determined as a dose-response-curve. Growth inhibition is determined by measuring the length of the main shoots, the side shoots and the roots as well as determining the plants’ fresh and dry weight. This paper describes the design of the Myriophyllum spicatum test system and includes results with 3,5-Dichlorophenol.     

Removal,adsorption and desorption of pentachlorophenol (PCP) by filamentous fungi: Rhizopusarrhizus and Cunninghamella elegans in batch system

PCP was, and in some countries still is, one of the most frequently used fungicides and pesticides, specially in wood preservation. The extensive use is correlated with contamination of water and soil and it is detected in several compartments of the food chain.

Some Micromycetes are able to adsorb and degrade PCP, with two mechanisms involved: biosorption (including both adsorption and absorption) and biodegradation.

Our work is focused on the biosorption alone and biodegradation‐biosorption of PCP by respectively denatured and living R.arrhizus and C.elegans fungi.

Living fungi are cultivated in batch system and denaturation is obtained by drying (70°C) and grinding the fungi to a calibrated powder (200–400 μm). Kinetic studies are performed with 10 mg/1 PCP initial concentration. Adsorption capacity is measured at equilibrium concentration as high as about 400 mg/1 PCP.

The results show that: PCP adsorption, for the two fungi, follows a two steps process. R. arrhizus dead and living biomasses are able to bind respectively, 75 and 55% of a 10 mg/1 PCP initial concentration in 1 hour contact time and then 75 and 100% in 96 hours. For C.elegans, 70 and 28% in 1 hour and in 96 hours 70 and 90%, respectively.

The PCP binding by living fungi is higher than non living ones, but with a slower rate.

The maximum PCP adsorption capacity is about 24 mg/g of R.arrhizus dried biomasses and 16 mg/g for C.elegans ones, in 48 hours contact time. Isotherm curves follow the Langmuir model.

Desorption studies with methanol (to reuse biomasses) shows that it is a rapid phenomenon (about 100% in 24 hours for the two fungi).

An industrial and economical process to depollute contaminated water by PCP is possible by using cheap fungal by‐products from fermentation industries.     

Numerical simulation of benzene transport in shoreline groundwater affected by tides under different conditions

● An approach for assessing the transport of benzene on the beach was proposed. ● The behavior of benzene in the subsurface of the beach was impacted by tide. ● Tidal amplitude influenced the travel speed and the benzene biodegradation. ● Hydraulic conductivity had the impact on plume residence time and biodegradation. ● Plume dispersed and concentration decreased due to high longitudinal dispersivity. The release and transport of benzene in coastal aquifers were investigated in the present study. Numerical simulations were implemented using the SEAM3D, coupled with GMS, to study the behavior of benzene in the subsurface of tidally influenced beaches. The transport and fate of the benzene plume were simulated, considering advection, dispersion, sorption, biodegradation, and dissolution on the beach. Different tide amplitudes, aquifer characteristics, and pollutant release locations were studied. It was found that the tide amplitude, hydraulic conductivity, and longitudinal dispersivity were the primary factors affecting the fate and transport of benzene. The tidal amplitude influenced the transport speed and percentage of biodegradation of benzene plume in the beach. A high tidal range reduced the spreading area and enhanced the rate of benzene biodegradation. Hydraulic conductivity had an impact on plume residence time and the percentage of contaminant biodegradation. Lower hydraulic conductivity induced longer residence time in each beach portion and a higher percentage of biodegradation on the beach. The plume dispersed and the concentration decreased due to high longitudinal dispersivity. The results can be used to support future risk assessment and management for the shorelines impacted by spill and leaking accidents. Modeling the heterogeneous beach aquifer subjected to tides can also be further explored in the future study.     

Spatial environmental risk evaluation of potential toxic elements in stream sediments

Potential toxic elements (PTE), in stream sediments, were used as contamination indicators for the definition of high-/low-grade spatial clusters in the Monfortinho area (Central Portugal). A set of 271 stream sediment samples was used for spatial modelling and further definition of rings of enrichment—high and low rings. A three-step multivariate statistical and geostatistical approach was used: (1) principal components analysis for PTE’s association evaluation and dimensionality reduction; (2) ordinary kriging as an unbiased interpolator for content inference and construction of a continuous representation of the considered attributes, at any arbitrary spatial location; (3) G clustering algorithm for the definition of high and low significance clusters. A moderate contamination in stream sediments is observed for almost all the considered PTE and a very high contamination for Ba, Cr and B. High contamination clusters are observed for Fe, Ni, Ba, Cu, B, Zn, V—northwest and southeast clusters—and for Cr—north and southwest clusters. The contamination degree index varies from moderate to high, which is mainly associated with the old mineralizations. The high computed rings often overlap the areas of abandoned Ba–Zn mineralization, as well as the sedimentary gold concentrations, along the Erges River banks. Tin and Cd spatial distribution may be related to former cassiterite exploitations in the survey area. Chromium is possibly connected with the schists. The definition of clusters with a PTE spatial enrichment will allow for the identification of contamination activities and therefore, the definition of adequate monitoring and mitigation actions.     

Effect of dilution rate on dynamic and steady-state biofilm characteristics during phenol biodegradation by immobilized <Emphasis Type="Italic">Pseudomonas desmolyticum</Emphasis> cells in a pulsed plate bioreactor

Pulsed plate bioreactor (PPBR) is a biofilm reactor which has been proven to be very efficient in phenol biodegradation. The present paper reports the studies on the effect of dilution rate on the physical, chemical and morphological characteristics of biofilms formed by the cells of Pseudomonas desmolyticum on granular activated carbon (GAC) in PPBR during biodegradation of phenol. The percentage degradation of phenol decreased from 99% to 73% with an increase in dilution rate from 0.33 h^–1 to 0.99 h^–1 showing that residence time in the reactor governs the phenol removal efficiency rather than the external mass transfer limitations. Lower dilution rates favor higher production of biomass, extracellular polymeric substances (EPS) as well as the protein, carbohydrate and humic substances content of EPS. Increase in dilution rate leads to decrease in biofilm thickness, biofilm dry density, and attached dry biomass, transforming the biofilm from dense, smooth compact structure to a rough and patchy structure. Thus, the performance of PPBR in terms of dynamic and steady-state biofilm characteristics associated with phenol biodegradation is a strong function of dilution rate. Operation of PPBR at lower dilution rates is recommended for continuous biological treatment of wastewaters for phenol removal.

Open image in new window

     

Bisphenol A and metabolites released by biodegradation of polycarbonate in seawater

This is the first report of bisphenol A release from polycarbonate during biodegradation by marine microorganisms. Bisphenol A is a monomer in polycarbonate and an endocrine disruptor toxic for marine organisms. Biodegradation of polycarbonate is poorly documented. Here, we have tested the possible release of bisphenol A and metabolites during biodegradation of polycarbonate by marine microorganisms. Polycarbonate degradation was carried out in vitro using a mixed marine microbial consortium isolated from the Bay of Bengal, India, 1 year under controlled laboratory conditions. The degradation was monitored by elemental analysis (EA), Fourier transform infrared spectroscopy (FTIR), nuclear magnetic resonance spectroscopy (NMR), and gas chromatography—mass spectrometry (GC–MS). The organic soluble metabolites were analyzed by high-performance liquid chromatography (HPLC). We found that bisphenol A was released. The amount of bisphenol A released during 1 year is higher than the half-maximal effective concentration (EC₅₀) values reported for marine organisms. We also identified the following bisphenol A metabolites: 4-hydroxyacetophenone, 4-hydroxybenzaldehyde, and 4-hydroxybenzoic acid. Polycarbonate biodegradation was evidenced by gravimetric weight loss and Fourier transform infrared spectroscopy. The reduction of methyl and carbonyl indices suggests oxidation and hydrolysis of the polymer, respectively. 2D NMR showed an aromatic C–C cleavage.     

Integrative assessment of sediment quality in lower basin affected by former mining in Brazil

The Ribeira de Iguape River (Southeast Brazil) is metal contaminated by mining activities. Despite it has been cataloged as “in via of restoration” by the literature, this basin is still a sink of pollution in some segments of the fluvial system. This study aimed to assess the sediment quality in the lower part of the RIR basin. The employed approach was based on biological responses of the freshwater clam Corbicula fluminea after 7-day exposure bioassays using as the reference site the Perequê Ecological Park. Toxic responses (burial activity and lethality) and biochemical biomarkers (GST, GR, GPx, LPO, MTs, AChE and DNA damage) were evaluated and then integrated with metal bioavailability and chemical concentrations to address the sediment quality in the area through the weight-of-evidence approach. A multivariate analysis identified linkages between biological responses and contamination. Results pointed that, despite being below the benchmarks of the US Environmental Protection Agency, there is slight metal contamination in the lower part of the basin which induces oxidative stress in C. fluminea; other toxic responses were sometimes attributed to As and Cr bioaccumulation. The sediment quality values (TEL–PEL values in mg/kg) were calculated for the current study for As (0.63–1.31), Cr (3.5–11.05), Cs (1.0–1.17), Cu (6.32–7.32), Ni (6.78–7.46), Ti (42.0–215), V (1.77–8.00). By comparison with other international guidelines, the sediment quality of the lower basin of the Vale de Ribeira does not identify a significant environmental risk.     

Comparison of sequential with intimate coupling of photolysis and biodegradation for benzotriazole

Benzotriazole (BTA) is an emerging contaminant that also is a recalcitrant compound. Sequential and intimate coupling of UV-photolysis with biodegradation were investigated for their impacts on BTA removal and mineralization in aerobic batch experiments. Special attention was given to the role of its main photolytic products, which were aminophenol (AP), formic acid (FA), maleic acid (MA), and phenazine (PHZ). Experiments with sequential coupling showed that BTA biodegradation was accelerated by photolytic pretreatment up to 9 min, but BTA biodegradation was slowed with longer photolysis. FA and MA accelerated BTA biodegradation by being labile electron-donor substrates, but AP and PHZ slowed the rate because of inhibition due to their competition for intracellular electron donor. Because more AP and PHZ accumulated with increasing photolysis time, their inhibitory effects began to dominate with longer photolysis time. Intimately coupling photolysis with biodegradation relieved the inhibition effect, because AP and PHZ were quickly biodegraded and did not accumulate, which accentuated the beneficial effect of FA and MA.

Open image in new window